Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1084

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9452 and 9453 are separated by 516 nucleotides mRNA_1084: 9452 - BLAST secreted protein [Melampsora larici-populina 98AG31], at 371,981 to 373,255 9452 mRNA_1085: 9453 - Hypothetical Protein, at 373,772 to 374,332 9453

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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371,219 - -1.1
371,228 + -1.5
371,244 + -0.9
371,354 + +0.2
371,459 - +0.6
371,460 + +0.6
371,462 - +0.5
371,466 - -1.3
371,468 + +0.1
372,109 - 9452 mRNA_1084 0.10 +2.0
372,136 - 9452 mRNA_1084 0.12 -0.9
372,217 - 9452 mRNA_1084 0.19 +0.1
372,643 - 9452 mRNA_1084 0.52 +0.0
372,668 + 9452 mRNA_1084 0.54 +0.9
372,674 - 9452 mRNA_1084 0.54 +1.1
372,675 + 9452 mRNA_1084 0.54 -1.8
372,792 + 9452 mRNA_1084 0.64 -0.7
372,811 + 9452 mRNA_1084 0.65 +0.2
372,812 - 9452 mRNA_1084 0.65 -0.2
372,854 - 9452 mRNA_1084 0.68 -1.1
373,119 - 9452 mRNA_1084 0.89 -1.8
373,140 + +0.3
373,551 + -0.3
373,591 - -0.0
373,591 - +0.4
373,597 + -0.3
373,597 - +0.5
373,746 - +1.1
373,790 - -0.3
373,888 - 9453 mRNA_1085 0.21 -0.6
373,919 + 9453 mRNA_1085 0.26 -0.6
373,937 - 9453 mRNA_1085 0.29 +0.3

Or see this region's nucleotide sequence