Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1090

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9457 and 9458 are separated by 288 nucleotides9458 and 9459 are separated by 370 nucleotides mRNA_1089: 9457 - K01638 aceB, glcB malate synthase, at 381,522 to 383,960 9457 mRNA_1090: 9458 - K12393 AP1M AP-1 complex subunit mu, at 384,249 to 386,320 9458 mRNA_1091: 9459 - Hypothetical Protein, at 386,691 to 388,371 9459

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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383,363 + 9457 mRNA_1089 0.75 -3.6
383,548 + 9457 mRNA_1089 0.83 -2.2
383,689 - 9457 mRNA_1089 0.89 -0.3
383,778 + -3.0
383,807 - -3.0
383,815 + -3.7
384,074 - -0.8
386,407 - -1.3
386,637 + +1.7
386,690 - -0.2
387,121 - 9459 mRNA_1091 0.26 +1.9

Or see this region's nucleotide sequence