Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1120

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9487 and 9488 are separated by 571 nucleotides9488 and 9489 are separated by 149 nucleotides mRNA_1119: 9487 - Hypothetical Protein, at 447,624 to 448,229 9487 mRNA_1120: 9488 - KOG1612 Exosomal 3'-5' exoribonuclease complex, subunit Rrp42, at 448,801 to 450,033 9488 mRNA_1121: 9489 - K05389 KCNKF potassium channel subfamily K, other eukaryote, at 450,183 to 453,173 9489

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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447,835 + 9487 mRNA_1119 0.35 +0.5
447,872 + 9487 mRNA_1119 0.41 +0.5
447,914 + 9487 mRNA_1119 0.48 +0.0
448,007 + 9487 mRNA_1119 0.63 -1.0
448,011 + 9487 mRNA_1119 0.64 -0.1
448,039 - 9487 mRNA_1119 0.68 -0.1
448,184 + +0.7
448,312 + -0.4
448,336 - -0.5
448,473 - -0.7
448,581 + +0.6
448,625 + +0.9
448,762 - -0.1
449,275 - 9488 mRNA_1120 0.38 -0.9
450,208 - -0.2
450,394 - +0.0
450,476 + +0.8
450,627 + 9489 mRNA_1121 0.15 -0.7
450,667 - 9489 mRNA_1121 0.16 +0.7

Or see this region's nucleotide sequence