Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1124

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9491 and 9492 are separated by 455 nucleotides9492 and 9493 are separated by 325 nucleotides mRNA_1123: 9491 - K00078 DHDH dihydrodiol dehydrogenase / D-xylose 1-dehydrogenase (NADP), at 456,532 to 457,918 9491 mRNA_1124: 9492 - K09613 COPS5, CSN5 COP9 signalosome complex subunit 5, at 458,374 to 459,990 9492 mRNA_1125: 9493 - K20465 OSBPL9_10_11, ORP9_10_11 oxysterol-binding protein-related protein 9/10/11, at 460,316 to 462,771 9493

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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457,469 - 9491 mRNA_1123 0.68 -0.7
457,602 + 9491 mRNA_1123 0.77 -1.9
457,609 - 9491 mRNA_1123 0.78 +0.1
457,622 - 9491 mRNA_1123 0.79 -0.5
457,910 - -0.2
457,916 + +0.5
457,917 + -0.4
458,059 - -0.8
458,075 - +0.3
458,080 + -1.4
458,088 + -0.8
458,095 - -0.9
458,103 - -0.5
458,112 + -1.3
458,200 + +0.2
458,220 - -0.7
458,223 + -0.4
458,229 + -0.9
458,229 + -0.8
458,375 + +0.1
458,376 + -1.4
458,409 - +0.1
458,654 + 9492 mRNA_1124 0.17 -1.5
458,798 + 9492 mRNA_1124 0.26 -0.6
458,931 + 9492 mRNA_1124 0.34 -0.7
459,172 - 9492 mRNA_1124 0.49 +0.2
459,174 + 9492 mRNA_1124 0.49 -0.5
459,403 + 9492 mRNA_1124 0.64 -0.9
459,958 - +0.4
459,988 - +0.2
460,185 - +0.6
460,255 + +1.2
460,419 - -0.5
460,556 - -1.8

Or see this region's nucleotide sequence