Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1179

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9546 and 9547 are separated by 265 nucleotides9547 and 9548 are separated by 780 nucleotides mRNA_1178: 9546 - Hypothetical Protein, at 582,125 to 583,749 9546 mRNA_1179: 9547 - K12611 DCP1B mRNA-decapping enzyme 1B, at 584,015 to 586,277 9547 mRNA_1180: 9548 - Hypothetical Protein, at 587,058 to 592,378 9548

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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583,043 - 9546 mRNA_1178 0.56 -0.6
583,070 + 9546 mRNA_1178 0.58 -0.5
583,368 + 9546 mRNA_1178 0.76 -0.8
583,942 + -0.4
583,942 + -1.7
583,964 + -0.6
583,966 + +0.2
584,696 + 9547 mRNA_1179 0.30 -0.2
585,280 + 9547 mRNA_1179 0.56 +0.6
585,510 + 9547 mRNA_1179 0.66 -0.2
585,998 - 9547 mRNA_1179 0.88 +0.9
586,020 + 9547 mRNA_1179 0.89 +1.3
586,158 - -0.8
586,314 + +1.5
586,447 - -0.1
586,560 - +0.2
586,715 - -0.0
586,741 + +1.5
586,838 + +1.3
586,842 + -0.9
586,899 - +0.1
586,946 - -1.2

Or see this region's nucleotide sequence