Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1187

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9554 and 9555 are separated by 290 nucleotides9555 and 9556 are separated by 271 nucleotides mRNA_1186: 9554 - K20410 MAPKAP1, SIN1 target of rapamycin complex 2 subunit MAPKAP1, at 603,862 to 607,168 9554 mRNA_1187: 9555 - Hypothetical Protein, at 607,459 to 608,635 9555 mRNA_1188: 9556 - Hypothetical Protein, at 608,907 to 610,370 9556

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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606,486 + 9554 mRNA_1186 0.79 +0.3
606,496 - 9554 mRNA_1186 0.80 -0.7
606,550 + 9554 mRNA_1186 0.81 +0.1
607,222 - +0.2
607,251 - -0.5
607,398 + -0.7
608,264 - 9555 mRNA_1187 0.68 -0.1
608,982 + -0.1

Or see this region's nucleotide sequence