Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1215

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9581 and 9582 are separated by 271 nucleotides9582 and 9583 are separated by 348 nucleotides mRNA_1213: 9581 - KOG1205 Predicted dehydrogenase, at 665,089 to 665,972 9581 mRNA_1214: 9582 - Hypothetical Protein, at 666,244 to 666,423 9582 mRNA_1215: 9583 - Hypothetical Protein, at 666,772 to 668,801 9583

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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666,040 + +0.1
666,162 + +0.3
666,187 - -0.0
666,309 - 9582 mRNA_1214 0.36 -1.0
666,450 - -0.8
667,488 + 9583 mRNA_1215 0.35 -2.4
667,815 + 9583 mRNA_1215 0.51 -0.4
668,840 - -0.7
669,139 - -0.4
669,258 - -0.4
669,283 - +0.5
669,324 - +0.2
669,356 + -0.5
669,417 + -1.1
669,452 - +1.1
669,590 - +0.5
669,596 + -0.2
669,608 - -1.0
669,618 - +0.2
669,624 + +0.2
669,625 + +0.3
669,626 - -0.6
669,626 + -1.4
669,694 - -0.4
669,719 + +0.1
669,719 + -0.2
669,729 - -0.4
669,731 - +1.1
669,734 - +0.2
669,734 + +2.2
669,753 - +0.1
669,753 - +0.8

Or see this region's nucleotide sequence