Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1230

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9598 and 9599 are separated by 174 nucleotides mRNA_1230: 9598 - K03267 ERF3, GSPT peptide chain release factor subunit 3, at 705,934 to 708,882 9598 mRNA_1231: 9599 - K11086 SNRPB, SMB small nuclear ribonucleoprotein B and B', at 709,057 to 710,079 9599

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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705,134 - -0.0
705,537 + +0.5
705,538 + -0.3
705,550 + +0.1
705,832 - -1.0
705,839 - +1.2
705,872 - -0.5
705,873 + +1.2
705,879 - +1.7
708,913 + +0.3
708,925 + -0.5
708,945 + +0.3
709,091 - +0.3

Or see this region's nucleotide sequence