Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1284

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9651 and 9652 are separated by 419 nucleotides9652 and 9653 are separated by 713 nucleotides mRNA_1283: 9651 - K02883 RP-L18e, RPL18 large subunit ribosomal protein L18e, at 830,551 to 831,805 9651 mRNA_1284: 9652 - K12897 TRA2 transformer-2 protein, at 832,225 to 833,165 9652 mRNA_1285: 9653 - Interpro Ribosomal protein 60S L18 and 50S L18e 0, at 833,879 to 834,376 9653

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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831,489 - 9651 mRNA_1283 0.75 +1.8
832,005 - +1.2
832,006 + +0.4
832,008 + +0.1
832,008 + -0.5
832,012 + -0.3
832,014 + +0.0
832,014 + -0.0
832,014 + -0.1
832,019 + -1.3
832,025 + +1.1
832,037 - -0.0
832,043 - +1.3
832,057 + +0.2
832,161 + +0.5
832,165 + +1.7
832,168 - -1.8
832,168 - -0.7
832,174 - -0.7
832,178 + +0.4
832,194 + -0.1
832,194 + -1.0
832,197 - -2.0
832,234 + -0.1
832,321 - 9652 mRNA_1284 0.10 -1.0
832,335 + 9652 mRNA_1284 0.12 +0.1
832,336 - 9652 mRNA_1284 0.12 +0.1
832,340 + 9652 mRNA_1284 0.12 -0.7
832,356 + 9652 mRNA_1284 0.14 +1.2
832,472 - 9652 mRNA_1284 0.26 -0.2
832,781 + 9652 mRNA_1284 0.59 -0.2
832,790 - 9652 mRNA_1284 0.60 -0.4
833,218 + -0.6
833,511 + -1.4
833,771 + +2.6
833,803 - +0.1
833,936 - 9653 mRNA_1285 0.11 +0.3
833,994 - 9653 mRNA_1285 0.23 -0.6

Or see this region's nucleotide sequence