Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1299

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9666 and 9667 are separated by 510 nucleotides9667 and 9668 overlap by 17 nucleotides mRNA_1298: 9666 - HMMPfam-Ubiquitin-2 like Rad60 SUMO-like-PF13881,ProSiteProfiles-Ubiquitin domain profile.-PS50053,SUPERFAMILY--SSF54236, at 859,180 to 859,998 9666 mRNA_1299: 9667 - K00600 glyA, SHMT glycine hydroxymethyltransferase, at 860,509 to 862,713 9667 mRNA_1300: 9668 - BLAST polynucleotide 5-hydroxyl-kinase grc3 [Xanthophyllomy..., at 862,697 to 864,122 9668

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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859,568 - 9666 mRNA_1298 0.47 -0.8
859,600 - 9666 mRNA_1298 0.51 -0.2
859,615 + 9666 mRNA_1298 0.53 +0.6
859,761 - 9666 mRNA_1298 0.71 +0.3
859,763 + 9666 mRNA_1298 0.71 -0.9
859,764 - 9666 mRNA_1298 0.71 -1.3
859,769 + 9666 mRNA_1298 0.72 -1.5
859,769 - 9666 mRNA_1298 0.72 +0.2
859,779 + 9666 mRNA_1298 0.73 -0.0
859,784 - 9666 mRNA_1298 0.74 -0.7
859,794 + 9666 mRNA_1298 0.75 +0.5
859,804 + 9666 mRNA_1298 0.76 -1.7
859,821 + 9666 mRNA_1298 0.78 +0.4
859,845 + 9666 mRNA_1298 0.81 -0.7
859,846 - 9666 mRNA_1298 0.81 -0.0
859,851 - 9666 mRNA_1298 0.82 +1.2
859,854 - 9666 mRNA_1298 0.82 -0.3
859,856 + 9666 mRNA_1298 0.83 -1.0
859,857 - 9666 mRNA_1298 0.83 +0.0
859,860 + 9666 mRNA_1298 0.83 +0.9
859,862 + 9666 mRNA_1298 0.83 -1.5
859,865 - 9666 mRNA_1298 0.84 +3.2
859,867 + 9666 mRNA_1298 0.84 +0.3
859,870 - 9666 mRNA_1298 0.84 -1.5
859,872 + 9666 mRNA_1298 0.84 -0.7
859,872 + 9666 mRNA_1298 0.84 -0.2
859,882 + 9666 mRNA_1298 0.86 +1.0
859,892 - 9666 mRNA_1298 0.87 -0.1
859,912 + 9666 mRNA_1298 0.89 -0.2
859,916 + 9666 mRNA_1298 0.90 -0.3
859,925 - -0.2
859,974 + -0.7
859,994 - -0.5
860,062 - -0.2
860,074 + -1.1
860,097 - +0.0
860,136 + +0.2
860,145 - +0.4
860,204 - -0.3
860,228 - +0.3
860,237 - -0.7
860,264 - +0.5
860,270 + -0.4
860,279 - +0.1
860,279 + +0.7
860,290 + -0.4
860,300 - -1.6
860,395 + -0.5
860,407 + +0.2
860,415 - +0.1
862,352 + 9667 mRNA_1299 0.84 -1.0
862,677 - -1.1
862,783 - +2.1
862,789 - +0.1
862,790 + +0.5
862,792 + +1.0
862,792 - +0.5
862,794 - -0.0
862,805 + -0.2
862,807 + +1.1
862,811 + +0.4
862,811 + -1.4
862,813 - -1.0
862,814 - -0.1
862,814 - +0.5
862,816 + -0.1
862,820 - -0.7
862,821 + +0.7
862,823 + +0.1
862,827 - -1.1
862,830 + -1.8
862,840 - 9668 mRNA_1300 0.10 -0.6
862,848 - 9668 mRNA_1300 0.11 +0.2
862,851 - 9668 mRNA_1300 0.11 +0.6
863,321 + 9668 mRNA_1300 0.44 -2.2

Or see this region's nucleotide sequence