Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1390

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9757 and 9758 are separated by 406 nucleotides9758 and 9759 are separated by 192 nucleotides mRNA_1389: 9757 - Hypothetical Protein, at 155,335 to 156,152 9757 mRNA_1390: 9758 - KOG0988 RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference, at 156,559 to 159,898 9758 mRNA_1391: 9759 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 160,091 to 161,111 9759

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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155,576 + 9757 mRNA_1389 0.29 -1.1
155,663 + 9757 mRNA_1389 0.40 +0.4
155,667 - 9757 mRNA_1389 0.41 +1.1
155,678 + 9757 mRNA_1389 0.42 -0.3
155,679 - 9757 mRNA_1389 0.42 -0.8
155,685 + 9757 mRNA_1389 0.43 -1.2
155,687 - 9757 mRNA_1389 0.43 +0.0
155,690 - 9757 mRNA_1389 0.43 +0.0
155,696 - 9757 mRNA_1389 0.44 +0.6
155,715 - 9757 mRNA_1389 0.46 +0.6
155,749 + 9757 mRNA_1389 0.51 +0.5
155,764 + 9757 mRNA_1389 0.52 -0.1
155,816 + 9757 mRNA_1389 0.59 +0.6
155,834 - 9757 mRNA_1389 0.61 -0.0
155,853 + 9757 mRNA_1389 0.63 -0.3
155,859 - 9757 mRNA_1389 0.64 +0.1
155,861 - 9757 mRNA_1389 0.64 +0.2
155,861 + 9757 mRNA_1389 0.64 -0.9
155,861 - 9757 mRNA_1389 0.64 +0.4
155,861 + 9757 mRNA_1389 0.64 +0.4
155,866 - 9757 mRNA_1389 0.65 +1.9
155,872 + 9757 mRNA_1389 0.66 +0.7
155,876 + 9757 mRNA_1389 0.66 +1.4
155,878 + 9757 mRNA_1389 0.66 -3.4
155,887 + 9757 mRNA_1389 0.67 -1.1
155,998 - 9757 mRNA_1389 0.81 -1.3
156,021 + 9757 mRNA_1389 0.84 -1.0
156,156 + -0.3
156,157 - -1.1
156,173 + -0.1
156,723 - +1.4
156,876 - -0.7
156,887 + +0.1
156,905 + 9758 mRNA_1390 0.10 -0.1
157,160 - 9758 mRNA_1390 0.18 +0.7
158,039 - 9758 mRNA_1390 0.44 -2.4
158,041 - 9758 mRNA_1390 0.44 +0.1
158,361 - 9758 mRNA_1390 0.54 +0.1
158,371 + 9758 mRNA_1390 0.54 -0.7
158,493 - 9758 mRNA_1390 0.58 -0.2
158,569 - 9758 mRNA_1390 0.60 -0.4
159,091 + 9758 mRNA_1390 0.76 -0.5
159,213 - 9758 mRNA_1390 0.79 +0.6
159,645 - -0.0
159,657 + -0.9
159,659 - +0.1
159,909 + -0.4
159,954 - +1.1
160,369 + 9759 mRNA_1391 0.27 +0.6
160,664 - 9759 mRNA_1391 0.56 -1.0
160,693 + 9759 mRNA_1391 0.59 +0.7
160,802 - 9759 mRNA_1391 0.70 -1.8
160,850 + 9759 mRNA_1391 0.74 -0.6

Or see this region's nucleotide sequence