Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1417

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9785 and 9786 are separated by 633 nucleotides mRNA_1417: 9785 - K01567 pdaA peptidoglycan-N-acetylmuramic acid deacetylase, at 227,247 to 228,373 9785 mRNA_1418: 9786 - HMMPfam-Fungal protein of unknown function (DUF1748)-PF08520, at 229,007 to 229,464 9786

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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226,307 - -0.2
226,754 - +1.5
226,894 + -0.3
226,908 + +0.6
227,006 - -0.4
227,058 + +0.8
227,350 - +0.0
227,813 - 9785 mRNA_1417 0.50 -0.2
228,236 + 9785 mRNA_1417 0.88 -1.5
228,244 + 9785 mRNA_1417 0.88 +1.3
228,390 + -1.1
228,529 + +0.3
228,535 + -0.9
228,559 + +0.2
228,832 - -1.9
228,961 - -0.6
228,987 - -0.1
229,106 + 9786 mRNA_1418 0.22 -0.1
229,114 + 9786 mRNA_1418 0.23 +0.7
229,246 + 9786 mRNA_1418 0.52 -0.5

Or see this region's nucleotide sequence