Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1430

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9797 and 9798 are separated by 780 nucleotides9798 and 9799 are separated by 258 nucleotides mRNA_1429: 9797 - HMMPfam-Protein of unknown function (DUF3237)-PF11578, at 262,714 to 263,546 9797 mRNA_1430: 9798 - KOG4205 RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1, at 264,327 to 265,821 9798 mRNA_1431: 9799 - Hypothetical Protein, at 266,080 to 266,508 9799

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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263,572 - -0.4
263,624 - -1.1
264,708 + 9798 mRNA_1430 0.25 -1.2
264,709 + 9798 mRNA_1430 0.26 -1.8
264,815 - 9798 mRNA_1430 0.33 -1.0
264,825 - 9798 mRNA_1430 0.33 -0.6
264,847 + 9798 mRNA_1430 0.35 -1.3
264,974 + 9798 mRNA_1430 0.43 -1.7
265,000 + 9798 mRNA_1430 0.45 -2.2
265,406 - 9798 mRNA_1430 0.72 -1.7
265,563 - 9798 mRNA_1430 0.83 -0.6
265,684 - -2.2
265,722 - -1.3
265,847 - +0.6
265,876 + -2.1
265,889 - -0.0
265,890 - -2.7
265,894 + -0.1
265,914 + -0.5
266,018 - +0.6
266,036 - -1.4
266,188 + 9799 mRNA_1431 0.25 +0.3
266,188 + 9799 mRNA_1431 0.25 +0.3
266,339 - 9799 mRNA_1431 0.60 -0.0
266,463 - 9799 mRNA_1431 0.89 +0.3
266,464 + 9799 mRNA_1431 0.90 +0.0
266,471 - +1.6
266,501 - -0.3
266,506 + -0.4
266,616 + -1.5
266,621 + +0.3
266,634 + -1.7
266,693 - +1.3
266,759 - +0.4
266,760 - +0.7

Or see this region's nucleotide sequence