Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1436

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9803 and 9804 are separated by 352 nucleotides9804 and 9805 are separated by 180 nucleotides mRNA_1435: 9803 - Hypothetical Protein, at 274,509 to 275,627 9803 mRNA_1436: 9804 - BLAST Stil protein [Mus musculus], at 275,980 to 277,394 9804 mRNA_1437: 9805 - K01526 E3.6.1.42 guanosine-diphosphatase, at 277,575 to 279,045 9805

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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275,258 + 9803 mRNA_1435 0.67 +1.1
275,909 + +1.0
275,928 + +0.2
275,942 + -1.1
275,971 + -0.0
276,261 - 9804 mRNA_1436 0.20 -0.3
276,518 - 9804 mRNA_1436 0.38 +0.4
276,969 + 9804 mRNA_1436 0.70 +0.8
276,969 + 9804 mRNA_1436 0.70 -0.8
277,099 - 9804 mRNA_1436 0.79 +0.3
277,110 + 9804 mRNA_1436 0.80 -2.0
277,274 - -0.3
278,172 - 9805 mRNA_1437 0.41 -0.4

Or see this region's nucleotide sequence