Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1438

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9806 and 9807 are separated by 317 nucleotides mRNA_1438: 9806 - Hypothetical Protein, at 280,347 to 281,494 9806 mRNA_1439: 9807 - K03544 clpX, CLPX ATP-dependent Clp protease ATP-binding subunit ClpX, at 281,812 to 284,553 9807

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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279,427 - -0.5
279,457 + -1.0
279,607 + -0.5
279,617 + -1.4
279,763 + -0.4
279,768 + -1.1
280,325 - -0.9
280,611 - 9806 mRNA_1438 0.23 -0.6
280,700 - 9806 mRNA_1438 0.31 +0.8
280,901 + 9806 mRNA_1438 0.48 +0.4
280,917 + 9806 mRNA_1438 0.50 +0.3
281,024 - 9806 mRNA_1438 0.59 -0.6
281,048 - 9806 mRNA_1438 0.61 -0.3
281,084 + 9806 mRNA_1438 0.64 +0.2
281,231 + 9806 mRNA_1438 0.77 -1.4
281,357 + 9806 mRNA_1438 0.88 +0.7
281,363 - 9806 mRNA_1438 0.89 +0.1
281,371 + 9806 mRNA_1438 0.89 -0.0
281,619 - +0.0
281,629 - -0.8
281,739 - +1.1
281,753 - -0.2
281,756 + -0.7
281,757 + +0.0
281,888 - -0.5
281,941 - -0.1
281,944 + +0.2
282,052 - +0.2
282,195 - 9807 mRNA_1439 0.14 -0.2

Or see this region's nucleotide sequence