Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1482

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9850 and 9851 are separated by 278 nucleotides mRNA_1482: 9850 - BLAST zn -c6 transcription factor [Malassezia pachyderm..., at 409,012 to 409,512 9850 mRNA_1483: 9851 - BLAST Protein priB [Grifola frondosa], at 409,791 to 410,399 9851

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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408,243 + -0.8
408,428 - -1.0
408,570 - -0.5
408,571 + -1.4
408,592 - -0.5
408,625 + -0.1
408,654 + +0.1
408,781 + -0.3
408,933 - +1.8
409,093 + 9850 mRNA_1482 0.16 -0.5
409,229 + 9850 mRNA_1482 0.43 -0.2
409,381 + 9850 mRNA_1482 0.74 -0.4
409,431 - 9850 mRNA_1482 0.84 -0.7
409,456 + 9850 mRNA_1482 0.89 +0.1
409,496 - +0.5
409,527 - -0.6
409,582 + +0.1
409,737 + -0.8
409,783 + -0.4
410,170 - 9851 mRNA_1483 0.62 -2.1

Or see this region's nucleotide sequence