Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1493

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9860 and 9861 are separated by 137 nucleotides mRNA_1492: 9860 - K12855 PRPF6, PRP6 pre-mRNA-processing factor 6, at 434,341 to 437,683 9860 mRNA_1493: 9861 - KOG1981 SOK1 kinase belonging to the STE20/SPS1/GC kinase family, at 437,821 to 440,939 9861

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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437,829 - +0.5
437,836 + -0.5
438,107 - -0.1
438,253 + 9861 mRNA_1493 0.14 +0.8
438,265 + 9861 mRNA_1493 0.14 -0.1
438,349 - 9861 mRNA_1493 0.17 -2.2
438,527 - 9861 mRNA_1493 0.23 -0.1
438,544 - 9861 mRNA_1493 0.23 -1.4
438,629 - 9861 mRNA_1493 0.26 -1.1
439,559 - 9861 mRNA_1493 0.56 -0.0
439,862 + 9861 mRNA_1493 0.65 -0.5
440,023 - 9861 mRNA_1493 0.71 -1.9
440,170 + 9861 mRNA_1493 0.75 -1.2
440,396 - 9861 mRNA_1493 0.83 -1.9
440,556 - 9861 mRNA_1493 0.88 +0.2
441,030 - +0.2
441,152 - +0.5
441,170 + -0.6
441,184 - +2.3
441,207 + +1.0
441,239 + -1.5
441,317 - -0.1
441,336 + +0.3
441,345 - +0.5
441,353 + +0.6
441,354 + -0.3
441,370 - -0.4
441,375 - -0.5
441,376 + -0.6
441,376 + +0.9
441,379 - +0.5
441,384 + -0.0
441,387 - -0.8
441,433 + +0.3
441,460 + +0.3
441,478 - +0.1
441,498 - +0.4
441,504 - +0.0
441,509 - +0.3
441,520 + -1.8
441,527 + -0.3
441,612 - +0.8
441,622 + +0.2
441,756 - -0.9
441,821 - -0.1
441,822 + -0.4
441,825 - -0.3
441,853 - +0.0

Or see this region's nucleotide sequence