Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1531

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9898 and 9899 are separated by 288 nucleotides9899 and 9900 are separated by 83 nucleotides mRNA_1530: 9898 - K15296 NAPA, SNAPA, SEC17 alpha-soluble NSF attachment protein, at 524,538 to 525,796 9898 mRNA_1531: 9899 - KOG1852 Cell cycle-associated protein, at 526,085 to 527,071 9899 mRNA_1532: 9900 - K00766 trpD anthranilate phosphoribosyltransferase, at 527,155 to 528,581 9900

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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525,271 + 9898 mRNA_1530 0.58 +0.4
526,439 - 9899 mRNA_1531 0.36 -2.0
526,464 + 9899 mRNA_1531 0.38 -0.1
526,573 + 9899 mRNA_1531 0.49 -0.1
526,888 + 9899 mRNA_1531 0.81 +0.2
526,938 + 9899 mRNA_1531 0.86 +1.2
526,998 - -0.3

Or see this region's nucleotide sequence