Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1535

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9902 and 9903 are separated by 459 nucleotides9903 and 9904 are separated by 120 nucleotides mRNA_1534: 9902 - K12493 ARFGAP2_3 ADP-ribosylation factor GTPase-activating protein 2/3, at 530,272 to 532,362 9902 mRNA_1535: 9903 - K12471 EPN epsin, at 532,822 to 534,645 9903 mRNA_1536: 9904 - K19783 HCS1 DNA polymerase alpha-associated DNA helicase A, at 534,766 to 537,382 9904

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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531,979 - 9902 mRNA_1534 0.82 -0.7
531,996 + 9902 mRNA_1534 0.82 +2.1
532,413 - -0.3
532,415 - -3.4
532,419 - -0.2
532,426 + -0.4
532,428 - -0.7
532,433 + -0.2
532,435 + -0.2
532,442 + -0.6
532,444 + -0.1
532,573 - -0.9
532,576 - -1.0
532,578 - -0.3
532,580 + +0.5
532,714 + +0.3
532,717 - -3.4
532,718 + +2.0
532,720 - -0.5
532,741 + -0.0
533,032 + 9903 mRNA_1535 0.12 -0.0
533,325 + 9903 mRNA_1535 0.28 -0.5
533,615 + 9903 mRNA_1535 0.43 -0.9
534,236 + 9903 mRNA_1535 0.78 -0.4
534,476 + -0.3
534,492 - +0.1
534,505 - +0.3
534,751 - +1.6
534,774 + +0.5
535,529 - 9904 mRNA_1536 0.29 +0.4
535,554 + 9904 mRNA_1536 0.30 +0.6

Or see this region's nucleotide sequence