Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1607

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9974 and 9975 are separated by 506 nucleotides9975 and 9976 are separated by 319 nucleotides mRNA_1606: 9974 - Hypothetical Protein, at 705,021 to 705,665 9974 mRNA_1607: 9975 - HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 706,172 to 709,618 9975 mRNA_1608: 9976 - K19704 PTC1 protein phosphatase PTC1, at 709,938 to 711,637 9976

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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705,219 - 9974 mRNA_1606 0.31 -0.1
705,342 + 9974 mRNA_1606 0.50 +0.6
705,650 + -0.6
705,839 - +0.6
705,946 + -0.5
705,982 - -0.4
706,004 - -0.1
706,016 - -0.7
706,095 - -0.1
706,096 + -0.3
706,110 + +1.1
706,427 + +0.5
706,438 - +0.1
706,522 + 9975 mRNA_1607 0.10 -1.3
706,821 - 9975 mRNA_1607 0.19 -1.4
706,855 + 9975 mRNA_1607 0.20 +0.9
706,945 - 9975 mRNA_1607 0.22 -0.6
707,971 - 9975 mRNA_1607 0.52 +0.2
708,015 + 9975 mRNA_1607 0.53 +0.8
708,036 + 9975 mRNA_1607 0.54 +0.4
708,063 - 9975 mRNA_1607 0.55 -0.9
708,070 + 9975 mRNA_1607 0.55 -0.9
708,130 - 9975 mRNA_1607 0.57 -0.1
708,164 - 9975 mRNA_1607 0.58 +0.8
708,389 + 9975 mRNA_1607 0.64 +0.4
708,458 + 9975 mRNA_1607 0.66 -1.3
708,493 + 9975 mRNA_1607 0.67 +0.3
708,866 + 9975 mRNA_1607 0.78 -0.1
708,871 - 9975 mRNA_1607 0.78 -0.0
709,019 + 9975 mRNA_1607 0.83 -0.4
709,049 + 9975 mRNA_1607 0.83 -0.6
709,085 - 9975 mRNA_1607 0.85 -0.5
709,149 + 9975 mRNA_1607 0.86 +1.9
709,206 - 9975 mRNA_1607 0.88 -0.1
709,291 - +0.5
709,324 + +0.3
709,332 + -0.3
709,450 + +0.3
709,501 - -0.5
709,617 + -0.0
709,624 - -0.4
709,633 + -0.1
709,671 - -0.3
709,687 - -0.6
709,696 + +0.2
709,724 + -0.1
709,813 + +0.1
709,926 + -0.8
709,949 + -2.5
710,068 + +0.1
710,082 + -0.7
710,161 - 9976 mRNA_1608 0.13 -2.3
710,204 + 9976 mRNA_1608 0.16 -0.8
710,206 + 9976 mRNA_1608 0.16 -0.5
710,536 + 9976 mRNA_1608 0.35 +0.1

Or see this region's nucleotide sequence