Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1615

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9982 and 9983 are separated by 468 nucleotides mRNA_1614: 9982 - KOG2819 Uncharacterized conserved protein, at 722,930 to 724,798 9982 mRNA_1615: 9983 - K03283 HSPA1_8 heat shock 70kDa protein 1/8, at 725,267 to 727,926 9983

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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724,337 - 9982 mRNA_1614 0.75 +0.2
724,769 - -0.2
725,242 + -0.7
725,419 + +0.6
725,560 - 9983 mRNA_1615 0.11 +0.4
728,045 + +0.6
728,060 + -0.7
728,073 - -1.3
728,074 + -0.1
728,074 + +0.9
728,077 + +1.1
728,080 + +0.1
728,088 + -0.2
728,090 + -0.1
728,096 - -0.1
728,097 + +0.3
728,097 - -0.6
728,112 + -0.2
728,235 - -0.7
728,243 - -0.4
728,246 + -0.6
728,271 + -0.1
728,288 + +0.2
728,569 + +0.7
728,676 + -0.1
728,681 + -1.2
728,702 - -0.0
728,838 - -0.6

Or see this region's nucleotide sequence