Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1666

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10032 and 10033 are separated by 21 nucleotides10033 and 10034 are separated by 293 nucleotides10034 and 10035 are separated by 379 nucleotides mRNA_1664: 10032 - Hypothetical Protein, at 839,367 to 840,051 10032 mRNA_1665: 10033 - K03358 APC11 anaphase-promoting complex subunit 11, at 840,073 to 840,626 10033 mRNA_1666: 10034 - HMMPfam-Nucleolar protein 12 (25kDa)-PF09805, at 840,920 to 841,915 10034 mRNA_1667: 10035 - K11527 K11527 two-component system, sensor histidine kinase and response regulator, at 842,295 to 847,609 10035

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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840,139 + 10033 mRNA_1665 0.12 +0.0
840,625 + +0.4
840,748 + +0.7
840,754 - -0.1
840,754 - +0.3
840,879 - -1.1
842,070 + -1.1
842,149 + -0.2
842,225 + +0.2
842,641 + +0.7

Or see this region's nucleotide sequence