Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1706

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10074 and 10075 overlap by 4 nucleotides mRNA_1706: 10074 - K08286 E2.7.11.- protein-serine/threonine kinase, at 343 to 1,191 10074 mRNA_1707: 10075 - BLAST related to SNF1-related protein kinase KIN10 [Melanop..., at 1,188 to 2,835 10075

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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26 + -0.6
27 + +0.7
28 + +0.5
31 + -0.7
31 + +0.8
41 + +0.5
66 + -0.4
72 - -0.3
72 - -0.6
93 + -0.5
104 + -1.6
105 + -0.7
108 + -1.0
120 - -1.5
128 + -0.6
135 - -0.2
136 + +0.6
136 - +0.2
137 - +0.5
137 - -1.5
138 + +0.4
139 + +0.1
141 - +0.3
150 - -1.4
151 - -0.1
155 + -1.1
155 + -0.3
156 + +0.1
158 + +0.2
173 - -0.8
175 + +0.1
180 - -1.4
215 + -0.1
220 - +0.9
234 + +0.7
254 - +0.6
283 + -0.5
304 + +0.2
322 + -0.5
324 + -0.1
427 + +0.6
453 + 10074 mRNA_1706 0.13 +0.5
465 - 10074 mRNA_1706 0.14 +0.8
482 + 10074 mRNA_1706 0.16 +0.9
493 - 10074 mRNA_1706 0.18 -0.0
647 + 10074 mRNA_1706 0.36 +0.2
683 - 10074 mRNA_1706 0.40 +0.9
809 + 10074 mRNA_1706 0.55 +0.8
842 - 10074 mRNA_1706 0.59 +0.0
844 + 10074 mRNA_1706 0.59 -1.2
848 - 10074 mRNA_1706 0.59 +1.3
902 + 10074 mRNA_1706 0.66 -0.4
949 - 10074 mRNA_1706 0.71 -1.5
949 - 10074 mRNA_1706 0.71 -1.5
950 + 10074 mRNA_1706 0.71 -1.1
974 - 10074 mRNA_1706 0.74 -0.2
1,016 + 10074 mRNA_1706 0.79 -0.3
1,065 + 10074 mRNA_1706 0.85 -1.3
1,118 + +0.2
1,142 + +0.0
1,155 + +0.2
1,272 - +0.2
1,281 + -0.1
1,573 + 10075 mRNA_1707 0.23 +0.5
1,625 + 10075 mRNA_1707 0.27 -2.4
1,625 + 10075 mRNA_1707 0.27 +0.4
1,628 + 10075 mRNA_1707 0.27 +0.2
1,646 + 10075 mRNA_1707 0.28 +0.8
1,649 - 10075 mRNA_1707 0.28 -0.3
1,680 + 10075 mRNA_1707 0.30 +0.2
1,781 + 10075 mRNA_1707 0.36 +0.5
1,926 + 10075 mRNA_1707 0.45 +0.1
1,996 + 10075 mRNA_1707 0.49 +0.6
2,005 - 10075 mRNA_1707 0.50 -0.6
2,010 - 10075 mRNA_1707 0.50 +0.5
2,033 + 10075 mRNA_1707 0.51 -0.2
2,068 + 10075 mRNA_1707 0.53 +1.1
2,076 + 10075 mRNA_1707 0.54 -0.8

Or see this region's nucleotide sequence