Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1736

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10104 and 10105 are separated by 275 nucleotides mRNA_1736: 10104 - K01593 DDC aromatic-L-amino-acid decarboxylase, at 78,147 to 80,608 10104 mRNA_1737: 10105 - KOG1021 Acetylglucosaminyltransferase EXT1/exostosin 1, at 80,884 to 82,688 10105

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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77,176 - +0.7
77,221 - -0.0
77,224 - -1.0
77,234 + -0.1
77,241 + +1.2
77,242 + +0.2
77,251 + +0.0
77,251 + +0.5
77,256 + +0.2
77,260 - +0.6
77,261 + +0.6
77,262 + -0.4
77,262 - +0.4
77,291 + -0.1
77,294 - -0.0
77,295 - +1.2
77,324 + +0.3
77,334 - +0.8
77,339 - +0.3
77,345 - +1.0
77,350 - -0.1
77,350 + +0.3
77,351 + -0.4
77,353 + +0.9
77,360 + +0.2
77,373 - +0.2
77,374 - -1.5
77,386 + -0.7
77,394 - +0.2
77,396 + -0.2
77,399 - +1.3
77,400 + +0.3
77,400 + +0.1
77,407 + -0.2
77,412 - +0.4
77,421 + +0.0
77,422 + +0.1
77,425 + +0.3
77,427 + -0.0
77,427 + +0.8
77,434 + -0.4
77,717 + -1.6
77,722 + -0.2
77,976 - -0.2
78,120 - +2.3
78,287 - +0.7
78,617 + 10104 mRNA_1736 0.19 +0.3
78,775 - 10104 mRNA_1736 0.26 +0.0
78,889 - 10104 mRNA_1736 0.30 +1.3
78,898 - 10104 mRNA_1736 0.31 +1.1
78,927 - 10104 mRNA_1736 0.32 +0.6
79,189 + 10104 mRNA_1736 0.42 -1.3
79,335 + 10104 mRNA_1736 0.48 +0.1
79,343 - 10104 mRNA_1736 0.49 -0.7
79,374 - 10104 mRNA_1736 0.50 +0.4
79,382 + 10104 mRNA_1736 0.50 +0.4
79,606 - 10104 mRNA_1736 0.59 +0.1
80,622 - +0.2
80,625 - +1.0
80,669 - +0.2
80,789 + -0.1
80,790 - +1.1
80,795 - -0.4
80,803 - +0.3
80,842 + +0.5
80,970 + -1.0
81,115 + 10105 mRNA_1737 0.13 -2.5
81,237 - 10105 mRNA_1737 0.20 +0.4
81,252 + 10105 mRNA_1737 0.20 +0.3
81,257 + 10105 mRNA_1737 0.21 +0.0
81,292 + 10105 mRNA_1737 0.23 -0.1

Or see this region's nucleotide sequence