Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1750

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10117 and 10118 are separated by 960 nucleotides10118 and 10119 are separated by 144 nucleotides mRNA_1749: 10117 - Hypothetical Protein, at 111,051 to 112,240 10117 mRNA_1750: 10118 - K16185 RRAGA_B Ras-related GTP-binding protein A/B, at 113,201 to 114,530 10118 mRNA_1751: 10119 - KOG2726 Mitochondrial polypeptide chain release factor, at 114,675 to 115,608 10119

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
112,226 - -1.1
112,471 - +0.1
112,486 + +1.9
112,487 + -0.1
112,505 + -1.0
112,511 + +0.0
112,513 - -1.1
112,522 + -0.3
112,589 + +0.3
112,612 + -0.5
112,612 + +0.1
112,618 - -0.1
112,638 - +0.7
112,657 + -0.0
112,660 + +0.1
112,664 - -0.1
112,666 - -0.0
112,685 - -0.6
112,685 + -0.7
112,686 + -2.2
112,687 + +1.1
112,687 - -0.0
112,712 - -1.6
112,776 - -0.5
112,823 + -0.2
112,827 - +0.7
112,831 - +0.8
112,854 - +0.0
112,855 + -0.2
112,857 + +1.0
112,858 + -0.6
112,858 - +0.4
112,863 + +0.4
112,870 + -0.5
112,878 + -0.1
112,901 - -1.2
112,910 + -0.9
112,910 + -0.2
112,910 - +0.5
112,911 + -0.1
112,911 + -0.1
112,911 + +0.0
112,911 - +0.1
112,912 + +1.9
112,919 + -0.1
112,927 + +0.5
112,939 + -0.3
112,944 + +1.0
112,956 + -0.1
112,971 - -0.6
112,998 - +0.0
113,001 + +0.2
113,005 - -0.2
113,007 + -0.2
113,017 + +0.2
113,017 + +0.1
113,168 + -0.3
114,618 - -1.0
114,620 + -0.5
114,931 - 10119 mRNA_1751 0.27 +0.4
114,946 + 10119 mRNA_1751 0.29 +0.5

Or see this region's nucleotide sequence