Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1772

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10139 and 10140 are separated by 945 nucleotides10140 and 10141 are separated by 749 nucleotides mRNA_1771: 10139 - K14312 NUP155, NUP170, NUP157 nuclear pore complex protein Nup155, at 163,525 to 168,544 10139 mRNA_1772: 10140 - K01480 speB agmatinase, at 169,490 to 170,600 10140 mRNA_1773: 10141 - Hypothetical Protein, at 171,350 to 172,928 10141

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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168,629 - +0.2
168,765 - -3.2
168,830 - -0.6
169,061 - +0.4
169,061 - -1.0
169,067 + -1.2
169,067 + +0.6
169,100 - -1.3
169,374 - -0.6
169,457 - -1.2
169,636 - 10140 mRNA_1772 0.13 -0.1
169,931 - 10140 mRNA_1772 0.40 +0.5
169,968 + 10140 mRNA_1772 0.43 -0.9
170,010 - 10140 mRNA_1772 0.47 +0.9
170,066 + 10140 mRNA_1772 0.52 +0.7
170,357 - 10140 mRNA_1772 0.78 +0.9
170,361 - 10140 mRNA_1772 0.78 -0.6
170,521 - +0.2
170,664 - -0.3
170,686 + +0.2
170,820 + -0.8
170,824 + -1.8
170,827 - +1.6
170,837 - +0.6
170,847 - +0.0
170,971 - +0.2
171,115 + +0.1
171,231 - +1.1
171,239 + -0.8
171,240 - +0.3
171,280 + -0.5
171,414 - +0.2

Or see this region's nucleotide sequence