Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1797

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10164 and 10165 are separated by 110 nucleotides10165 and 10166 are separated by 513 nucleotides mRNA_1796: 10164 - K10878 SPO11 meiotic recombination protein SPO11, at 219,619 to 222,270 10164 mRNA_1797: 10165 - KOG2641 Predicted seven transmembrane receptor - rhodopsin family, at 222,381 to 224,884 10165 mRNA_1798: 10166 - KOG0725 Reductases with broad range of substrate specificities, at 225,398 to 226,777 10166

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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222,824 + 10165 mRNA_1797 0.18 -0.6
222,829 + 10165 mRNA_1797 0.18 +0.4
223,088 - 10165 mRNA_1797 0.28 +0.2
223,226 - 10165 mRNA_1797 0.34 +0.2
223,351 + 10165 mRNA_1797 0.39 -0.6
223,561 + 10165 mRNA_1797 0.47 +1.6
223,827 - 10165 mRNA_1797 0.58 +1.8
224,528 + 10165 mRNA_1797 0.86 +0.3
224,706 - +0.6
224,972 - -0.6
225,147 - +0.2
225,292 + -0.5
225,304 + -0.7
225,313 + -1.1
225,317 + -0.4
225,326 - -1.5
225,327 + -1.2
225,330 - -0.4
225,332 + +0.5
225,333 - +1.5
225,475 + +0.3
225,486 - -0.7
225,600 - 10166 mRNA_1798 0.15 -0.8
225,629 + 10166 mRNA_1798 0.17 -0.3

Or see this region's nucleotide sequence