Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1852

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10219 and 10220 are separated by 82 nucleotides10220 and 10221 are separated by 511 nucleotides mRNA_1851: 10219 - BLAST cell wall surface anchor family protein [Moniliop..., at 371,748 to 376,200 10219 mRNA_1852: 10220 - K06133 LYS5, acpT 4'-phosphopantetheinyl transferase, at 376,283 to 377,328 10220 mRNA_1853: 10221 - KOG4147 Uncharacterized conserved protein, at 377,840 to 378,489 10221

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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375,303 + 10219 mRNA_1851 0.80 -0.3
375,659 + 10219 mRNA_1851 0.88 +0.6
376,266 + -0.6
377,337 - -0.6
377,357 + +1.1
377,486 + -1.2
377,486 + -0.3
377,637 - +0.7

Or see this region's nucleotide sequence