Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1905

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10272 and 10273 are separated by 205 nucleotides mRNA_1904: 10272 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112, at 479,057 to 480,594 10272 mRNA_1905: 10273 - Hypothetical Protein, at 480,800 to 481,665 10273

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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479,861 + 10272 mRNA_1904 0.52 +0.0
480,169 + 10272 mRNA_1904 0.72 +0.6
480,416 + 10272 mRNA_1904 0.88 +0.1
480,691 - -0.2
480,696 + -1.6
480,706 + +0.3
480,715 + +1.3
480,723 + -0.5
480,820 + +0.7
480,831 - -0.5
480,841 + -0.6
480,841 + -0.6
480,857 + +0.4
480,905 + 10273 mRNA_1905 0.12 +0.0
480,930 - 10273 mRNA_1905 0.15 -0.1
480,938 + 10273 mRNA_1905 0.16 +0.2
480,976 + 10273 mRNA_1905 0.20 -0.5
480,982 - 10273 mRNA_1905 0.21 -0.8
480,997 + 10273 mRNA_1905 0.23 -0.2
481,054 + 10273 mRNA_1905 0.29 +0.2
481,093 + 10273 mRNA_1905 0.34 -0.4
481,106 + 10273 mRNA_1905 0.35 +0.9
481,107 - 10273 mRNA_1905 0.35 -0.8
481,113 + 10273 mRNA_1905 0.36 +1.7
481,114 + 10273 mRNA_1905 0.36 +0.4
481,129 - 10273 mRNA_1905 0.38 -0.8
481,132 + 10273 mRNA_1905 0.38 -2.4
481,135 + 10273 mRNA_1905 0.39 -0.3
481,135 + 10273 mRNA_1905 0.39 +0.2
481,158 + 10273 mRNA_1905 0.41 +0.5
481,170 - 10273 mRNA_1905 0.43 +0.0
481,190 + 10273 mRNA_1905 0.45 -0.7
481,202 + 10273 mRNA_1905 0.46 +0.4
481,213 + 10273 mRNA_1905 0.48 -1.1
481,220 + 10273 mRNA_1905 0.48 +0.9
481,235 - 10273 mRNA_1905 0.50 -1.2
481,236 + 10273 mRNA_1905 0.50 -0.1
481,244 + 10273 mRNA_1905 0.51 +0.2
481,314 - 10273 mRNA_1905 0.59 -0.8
481,315 + 10273 mRNA_1905 0.59 +0.2
481,334 + 10273 mRNA_1905 0.62 -0.2
481,378 - 10273 mRNA_1905 0.67 +0.1
481,384 + 10273 mRNA_1905 0.67 -0.6
481,399 - 10273 mRNA_1905 0.69 -2.1
481,403 - 10273 mRNA_1905 0.70 +0.7
481,425 - 10273 mRNA_1905 0.72 -0.1
481,432 + 10273 mRNA_1905 0.73 -0.5
481,439 + 10273 mRNA_1905 0.74 +0.1
481,453 - 10273 mRNA_1905 0.75 +0.7
481,454 + 10273 mRNA_1905 0.76 -0.4
481,455 - 10273 mRNA_1905 0.76 -0.3
481,458 + 10273 mRNA_1905 0.76 -0.1
481,465 - 10273 mRNA_1905 0.77 -2.0
481,468 + 10273 mRNA_1905 0.77 -0.5
481,469 + 10273 mRNA_1905 0.77 -0.8
481,485 + 10273 mRNA_1905 0.79 +1.5
481,489 - 10273 mRNA_1905 0.80 -2.1
481,501 - 10273 mRNA_1905 0.81 -0.1
481,536 + 10273 mRNA_1905 0.85 -0.7
481,549 - 10273 mRNA_1905 0.86 +1.5
481,609 + +0.5
481,613 + -0.5
481,620 + +0.6
481,631 - +0.7
481,636 + +0.2
481,646 + +0.4
481,662 + +0.1
481,679 + +0.1
481,695 + -1.1
481,697 + +0.5
481,719 - +0.2
481,733 - -0.8
481,770 + -1.7
481,772 + +0.6
481,816 + -0.5
481,816 + -0.1
481,819 + +0.2
481,826 - +1.8
481,829 + +0.6
481,830 - +0.6
481,832 - +0.1
481,842 - -0.8
481,853 + +0.2
481,857 - -0.0
481,859 + -0.0
481,864 - +1.5
481,866 - -0.6
481,867 + +0.1
481,867 - +0.0
481,869 + -0.1
481,869 - +0.4
481,870 - -0.6
481,873 - -0.2
481,880 + +0.2
481,881 + -0.6
481,882 + +0.2
481,890 - +0.2
481,890 + +1.4
481,893 + +0.3
481,895 - -0.7
481,896 + -0.0
481,897 - +0.5
481,897 + +0.2
481,897 + +0.4
481,898 + -0.9
481,898 + -0.6
481,900 + +1.2
481,903 - -0.9
481,904 - -1.5
481,905 - -0.9
481,909 + -0.4
481,909 + -0.3
481,910 + -1.8
481,915 + +1.1
481,916 + +0.4
481,918 + +1.5
481,920 + +0.7
481,920 - +1.4
481,921 + -1.6
481,926 + +1.7
481,948 + -0.4
481,950 - -0.0
481,952 + -1.7
481,990 - +0.7
482,010 - -0.8
482,010 - +0.2
482,037 - -0.6
482,141 + -1.4
482,152 - -1.2
482,167 + +0.9
482,173 + -0.7
482,180 - +0.0
482,220 - -0.3
482,221 + -0.6
482,222 - +0.3
482,235 + -1.3
482,375 + -1.1
482,379 + -0.6
482,382 + +0.2
482,386 - -0.5
482,387 - -1.1
482,391 + +0.5
482,395 - -0.3
482,397 + -0.8
482,418 - +0.4
482,435 + -1.4
482,435 + -0.1
482,439 + -0.6
482,442 - +1.1
482,443 + -0.9
482,444 - -0.0
482,445 - -0.9
482,445 + -0.3
482,446 + +0.0
482,447 - +0.3
482,449 + -1.0
482,450 + +0.4
482,451 - +0.0
482,451 - +0.4
482,456 - +1.3
482,458 - -0.4
482,461 - +0.1
482,464 + +0.9
482,464 + +0.2
482,471 + +0.1
482,472 - -0.1
482,473 + -0.4
482,474 - -0.3
482,474 + -0.6
482,475 + -1.0
482,481 - +0.4
482,483 - +0.5
482,484 + +0.3
482,485 - +0.5
482,490 - +0.1
482,490 - -0.3
482,492 + -0.1
482,494 - -0.6
482,494 - -1.4
482,495 - +0.8
482,495 - +0.9
482,507 - +0.1
482,509 + +0.6
482,524 - -0.5
482,635 - -0.5
482,653 - +1.4
482,654 - -0.1
482,659 - -1.2

Or see this region's nucleotide sequence