Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2035

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10402 and 10403 are separated by 171 nucleotides10403 and 10404 are separated by 119 nucleotides mRNA_2034: 10402 - HMMPfam-Spherulation-specific family 4-PF12138, at 799,369 to 800,999 10402 mRNA_2035: 10403 - K14824 ERB1, BOP1 ribosome biogenesis protein ERB1, at 801,171 to 804,014 10403 mRNA_2036: 10404 - HMMPfam-Alpha and gamma adaptin binding protein p34-PF10199, at 804,134 to 805,617 10404

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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800,700 + 10402 mRNA_2034 0.82 +0.0
800,989 - -0.4
804,209 + -0.2
804,368 - 10404 mRNA_2036 0.16 -0.6
804,563 + 10404 mRNA_2036 0.29 -0.3
804,695 + 10404 mRNA_2036 0.38 -0.9
804,856 + 10404 mRNA_2036 0.49 -0.9
804,863 + 10404 mRNA_2036 0.49 +0.7

Or see this region's nucleotide sequence