Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2097

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10464 and 10465 are separated by 651 nucleotides10465 and 10466 are separated by 414 nucleotides mRNA_2096: 10464 - K05754 ARPC5 actin related protein 2/3 complex, subunit 5, at 59,907 to 60,818 10464 mRNA_2097: 10465 - K03217 yidC, spoIIIJ, OXA1, ccfA YidC/Oxa1 family membrane protein insertase, at 61,470 to 63,350 10465 mRNA_2098: 10466 - Hypothetical Protein, at 63,765 to 64,899 10466

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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60,826 - +0.4
60,829 + -0.2
60,835 - +0.5
60,849 + +0.9
61,005 - -0.8
61,011 - -0.2
61,027 + -2.0
61,044 + +0.1
61,079 - -0.8
61,134 - +0.5
61,143 + +1.3
61,179 - -0.2
61,197 + -0.1
61,203 + +1.0
61,206 - -0.3
61,381 - +0.5
61,410 + +0.1
61,428 - -1.0
61,435 + -0.3
61,526 - -0.4
63,060 + 10465 mRNA_2097 0.85 +0.7
63,318 + +0.7
63,600 + +0.5
63,613 + +0.2
63,642 - +0.6
63,717 - -0.2
63,804 + +0.6
63,889 - 10466 mRNA_2098 0.11 +1.3
63,907 + 10466 mRNA_2098 0.13 +0.7
64,107 + 10466 mRNA_2098 0.30 +0.2

Or see this region's nucleotide sequence