Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2150

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10517 and 10518 are separated by 376 nucleotides10518 and 10519 are separated by 233 nucleotides mRNA_2149: 10517 - K12948 SPCS3, SPC3 signal peptidase complex subunit 3, at 191,152 to 191,850 10517 mRNA_2150: 10518 - Hypothetical Protein, at 192,227 to 192,680 10518 mRNA_2151: 10519 - K03348 APC1 anaphase-promoting complex subunit 1, at 192,914 to 199,163 10519

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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192,076 + +1.2
192,078 + -0.5
192,220 + -0.4
192,653 + +0.7
192,934 - +2.2

Or see this region's nucleotide sequence