Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2168

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10535 and 10536 are separated by 54 nucleotides10536 and 10537 are separated by 410 nucleotides mRNA_2167: 10535 - K03143 TFIIH3, GTF2H3, TFB4 transcription initiation factor TFIIH subunit 3, at 236,232 to 237,790 10535 mRNA_2168: 10536 - Hypothetical Protein, at 237,845 to 238,808 10536 mRNA_2169: 10537 - Hypothetical Protein, at 239,219 to 240,668 10537

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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237,805 - -0.8
237,911 - -0.1
237,926 + -1.1
237,932 - -0.2
238,036 + 10536 mRNA_2168 0.20 -0.1
238,070 - 10536 mRNA_2168 0.23 +0.5
238,180 + 10536 mRNA_2168 0.35 +1.1
238,188 + 10536 mRNA_2168 0.36 +0.4
238,191 - 10536 mRNA_2168 0.36 +1.6
238,197 - 10536 mRNA_2168 0.37 +1.1
238,197 + 10536 mRNA_2168 0.37 -0.2
238,197 + 10536 mRNA_2168 0.37 -0.1
238,203 - 10536 mRNA_2168 0.37 -0.4
238,355 - 10536 mRNA_2168 0.53 -2.8
238,401 + 10536 mRNA_2168 0.58 +0.4
238,421 - 10536 mRNA_2168 0.60 -0.1
238,525 - 10536 mRNA_2168 0.71 +2.0
238,656 + 10536 mRNA_2168 0.84 +0.2
238,665 + 10536 mRNA_2168 0.85 -1.6
238,670 - 10536 mRNA_2168 0.86 +0.2
238,705 - 10536 mRNA_2168 0.89 -0.3
238,947 - -0.2
238,958 + -0.3
239,120 + -1.3
239,125 - +0.1
239,360 - -1.5
239,387 - 10537 mRNA_2169 0.12 -0.3
239,419 + 10537 mRNA_2169 0.14 +0.3
239,550 + 10537 mRNA_2169 0.23 +0.5
239,734 + 10537 mRNA_2169 0.36 +0.2

Or see this region's nucleotide sequence