Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2182

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10550 and 10551 are separated by 357 nucleotides mRNA_2182: 10550 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 282,735 to 284,065 10550 mRNA_2183: 10551 - K00059 fabG 3-oxoacyl-[acyl-carrier protein] reductase, at 284,423 to 286,019 10551

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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281,748 + -0.4
281,795 - -0.4
281,801 - +0.4
281,924 - +0.2
282,256 + -0.8
282,373 - -0.5
282,379 + +0.1
282,389 - +0.3
282,515 - +0.1
282,651 - +0.5
282,663 + +1.2
282,666 - -1.0
282,677 + -0.6
282,686 + -1.4
282,810 + +0.5
282,927 + 10550 mRNA_2182 0.14 +0.6
282,950 + 10550 mRNA_2182 0.16 -0.6
283,092 - 10550 mRNA_2182 0.27 -0.1
284,083 + -0.6
284,121 - +0.0
284,124 + +0.9
284,251 + -0.3
284,973 - 10551 mRNA_2183 0.34 -0.4
284,978 - 10551 mRNA_2183 0.35 -0.1

Or see this region's nucleotide sequence