Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2282

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10649 and 10650 are separated by 842 nucleotides mRNA_2281: 10649 - K12190 VPS36, EAP45 ESCRT-II complex subunit VPS36, at 519,083 to 521,393 10649 mRNA_2282: 10650 - HMMPfam-Conidiation protein 6-PF10346, at 522,236 to 522,967 10650

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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521,269 + +1.4
521,291 + -1.4
521,326 + +0.2
521,403 - +0.4
521,410 + -0.4
521,561 - -0.0
521,564 - +0.0
521,567 - -0.2
521,568 + +0.8
521,568 + +1.7
521,569 - -0.9
521,569 + -1.6
521,603 - +0.6
521,621 - -0.8
521,627 - +0.1
521,643 + -0.2
521,655 - -1.4
521,657 + -0.6
521,701 + -1.0
521,703 - -0.0
521,713 + +1.3
521,720 - -0.1
521,865 + -1.3
521,914 + +0.7
522,015 + +0.3
522,045 + -0.2
522,494 + 10650 mRNA_2282 0.35 +0.2
522,808 - 10650 mRNA_2282 0.78 +0.2
522,956 - -0.0
523,083 + -1.5
523,242 + -0.1
523,287 - +0.1
523,370 + +0.4
523,659 - -0.2
523,959 - -0.9

Or see this region's nucleotide sequence