Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2318

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10685 and 10686 are separated by 353 nucleotides10686 and 10687 are separated by 147 nucleotides mRNA_2317: 10685 - K02264 COX5A cytochrome c oxidase subunit 5a, at 592,707 to 594,114 10685 mRNA_2318: 10686 - HMMPfam-Bromodomain associated-PF07524,HMMPfam-Transcription factor TFIID complex subunit 8 C-term-PF10406, at 594,468 to 595,983 10686 mRNA_2319: 10687 - KOG3872 FOG FHA domain, at 596,131 to 598,966 10687

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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593,484 - 10685 mRNA_2317 0.55 +0.5
594,239 - +0.7
594,265 - -0.2
594,295 + -2.2
596,067 - -0.0
596,084 - +0.5
596,100 - +0.5
596,234 + +0.8
596,241 + +1.0
596,242 + -0.5
596,365 - +1.4
596,389 + +1.3
596,533 + 10687 mRNA_2319 0.14 +0.8
596,538 - 10687 mRNA_2319 0.14 -1.5
596,681 + 10687 mRNA_2319 0.19 -0.1

Or see this region's nucleotide sequence