Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2330

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_2330: 10698 - KOG0583 Serine/threonine protein kinase, at 627,828 to 630,238 10698

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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626,888 - +1.7
626,891 - -0.7
626,996 + +0.3
627,025 - +0.2
627,030 + +0.4
627,054 + -0.3
627,172 - +0.3
627,172 + +0.6
627,189 + +0.1
627,196 - +1.0
627,213 - +1.0
627,312 - +0.9
627,324 + -0.2
627,353 - +0.2
627,373 + -0.9
627,379 + +0.9
627,487 - +1.3
627,508 + +0.3
627,609 - -0.4
627,648 + -0.1
627,665 + +1.0
627,665 + -0.1
627,683 - +0.7
627,907 - -0.4
628,826 - 10698 mRNA_2330 0.41 +0.9
629,401 + 10698 mRNA_2330 0.65 +0.2
629,519 - 10698 mRNA_2330 0.70 -0.2
630,117 - -0.8
630,247 + +0.3
630,268 + +0.4
630,271 - -0.1
630,274 - +0.7
630,275 - -0.0
630,288 + +1.1
630,409 - -0.6
630,427 - +0.7
630,434 + +0.4
630,445 - +0.4
630,460 + +0.3
630,467 + +0.5
630,474 + -0.0
630,582 + +0.5
630,588 + -2.1
630,592 - +0.5
630,601 - +0.2
630,602 + +0.3
630,603 - -0.0
630,604 + -0.5
630,605 - -1.8
630,607 - +0.3
630,608 + -0.5
630,608 - +1.5
630,609 + -0.4
630,611 - +0.6
630,613 - -0.2
630,616 - +0.6
630,617 + +1.0
630,620 + +2.4
630,620 + +1.0
630,620 - +0.4
630,621 + +0.1
630,622 + +0.4
630,622 + +0.2
630,622 + +1.2
630,625 + +0.7
630,656 + -0.1
630,658 - +0.2
630,678 + -0.2
630,709 - +0.1
630,710 - +1.0
630,710 + +0.4
630,714 - +0.2
630,727 - -0.3
630,731 - -0.0
630,732 - +2.1
630,734 + -0.5
630,735 - -0.7
630,736 + -0.7
630,736 - -0.9
630,739 - +0.4
630,750 + +0.2
630,751 - +1.0
630,755 - +0.3
630,755 + -0.6
630,757 - -1.1
630,760 - +0.2
630,764 + -0.0
630,766 + -0.9
630,767 + +0.4
630,767 + -1.0
630,771 + +0.4
630,780 + -0.2
630,985 - +0.2
631,022 - +0.1
631,032 - -0.4
631,049 - -0.3
631,053 - -0.3
631,055 + -0.5
631,058 + -0.5
631,060 - +1.9
631,070 + -0.1
631,092 + -0.4
631,130 - +2.1

Or see this region's nucleotide sequence