Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2397

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10764 and 10765 are separated by 151 nucleotides10765 and 10766 are separated by 97 nucleotides mRNA_2396: 10764 - K14169 CTU2, NCS2 cytoplasmic tRNA 2-thiolation protein 2, at 19,108 to 21,174 10764 mRNA_2397: 10765 - Hypothetical Protein, at 21,326 to 23,910 10765 mRNA_2398: 10766 - SUPERFAMILY--SSF52047, at 24,008 to 25,280 10766

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
20,503 - 10764 mRNA_2396 0.67 +0.8
20,539 - 10764 mRNA_2396 0.69 +0.6
20,699 + 10764 mRNA_2396 0.77 +0.7
20,982 + +1.7
21,395 - -0.7
21,705 - 10765 mRNA_2397 0.15 -0.0
21,849 + 10765 mRNA_2397 0.20 +1.0
21,851 + 10765 mRNA_2397 0.20 -2.1
21,857 - 10765 mRNA_2397 0.21 +0.2
21,971 - 10765 mRNA_2397 0.25 -0.8
21,987 - 10765 mRNA_2397 0.26 +0.2
22,005 + 10765 mRNA_2397 0.26 +0.3
22,007 - 10765 mRNA_2397 0.26 -0.8
22,290 - 10765 mRNA_2397 0.37 +1.1
22,292 - 10765 mRNA_2397 0.37 -0.8
22,295 - 10765 mRNA_2397 0.37 -1.2
22,305 - 10765 mRNA_2397 0.38 +1.5
22,442 - 10765 mRNA_2397 0.43 +1.9
22,574 + 10765 mRNA_2397 0.48 -1.0
22,578 - 10765 mRNA_2397 0.48 +0.5
22,586 - 10765 mRNA_2397 0.49 +0.4
22,776 + 10765 mRNA_2397 0.56 +0.7
22,789 + 10765 mRNA_2397 0.57 +1.8
22,899 - 10765 mRNA_2397 0.61 -0.5
22,924 - 10765 mRNA_2397 0.62 +0.1
22,941 - 10765 mRNA_2397 0.62 -3.3
22,948 + 10765 mRNA_2397 0.63 -1.4
23,076 - 10765 mRNA_2397 0.68 +0.5
23,087 - 10765 mRNA_2397 0.68 -0.2
23,205 - 10765 mRNA_2397 0.73 -1.1
23,224 - 10765 mRNA_2397 0.73 +0.3
23,495 - 10765 mRNA_2397 0.84 +0.1
23,667 - -1.8
23,682 + -1.5
23,780 - +0.0
23,789 + +0.2
23,790 + -0.2
23,814 + +1.0
23,941 - -0.6
23,953 + +2.5
23,955 + -0.6
24,014 + -1.2
24,021 + +0.4
24,121 + -1.8
24,133 - -0.8
24,145 + 10766 mRNA_2398 0.11 +0.5
24,169 - 10766 mRNA_2398 0.13 +0.6
24,440 - 10766 mRNA_2398 0.34 +0.5
24,579 - 10766 mRNA_2398 0.45 +0.3
24,581 - 10766 mRNA_2398 0.45 +0.7
24,720 - 10766 mRNA_2398 0.56 +0.3
24,750 + 10766 mRNA_2398 0.58 -0.4
24,773 + 10766 mRNA_2398 0.60 +1.1
24,856 - 10766 mRNA_2398 0.67 -1.4
24,895 + 10766 mRNA_2398 0.70 +0.2
24,895 + 10766 mRNA_2398 0.70 +0.2

Or see this region's nucleotide sequence