Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2440

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10807 and 10808 are separated by 420 nucleotides10808 and 10809 are separated by 418 nucleotides mRNA_2439: 10807 - BLAST ribosome biogenesis protein [Moniliophthora rorer..., at 132,736 to 133,822 10807 mRNA_2440: 10808 - Hypothetical Protein, at 134,243 to 137,592 10808 mRNA_2441: 10809 - KOG1284 Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase, at 138,011 to 140,441 10809

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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133,604 + 10807 mRNA_2439 0.80 +1.3
134,606 + 10808 mRNA_2440 0.11 -0.3
134,643 + 10808 mRNA_2440 0.12 +0.6
134,780 + 10808 mRNA_2440 0.16 +0.5
135,115 + 10808 mRNA_2440 0.26 +1.2
135,242 - 10808 mRNA_2440 0.30 -0.6
135,245 + 10808 mRNA_2440 0.30 +0.3
135,248 + 10808 mRNA_2440 0.30 -0.4
135,368 + 10808 mRNA_2440 0.34 -0.1
135,526 - 10808 mRNA_2440 0.38 -0.8
135,664 - 10808 mRNA_2440 0.42 -1.5
135,684 + 10808 mRNA_2440 0.43 +0.3
135,989 - 10808 mRNA_2440 0.52 -0.8
136,219 - 10808 mRNA_2440 0.59 +0.2
137,697 - -0.4
138,025 + +0.2
138,322 + 10809 mRNA_2441 0.13 +1.0

Or see this region's nucleotide sequence