Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2530

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10897 and 10898 are separated by 272 nucleotides mRNA_2529: 10897 - K01613 psd, PISD phosphatidylserine decarboxylase, at 366,940 to 368,677 10897 mRNA_2530: 10898 - K14634 TIGAR fructose-2,6-bisphosphatase, at 368,950 to 370,646 10898

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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367,996 + 10897 mRNA_2529 0.61 -1.2
367,996 + 10897 mRNA_2529 0.61 -0.1
367,997 - 10897 mRNA_2529 0.61 -0.1
368,122 + 10897 mRNA_2529 0.68 -0.5
368,172 - 10897 mRNA_2529 0.71 -0.8
368,180 + 10897 mRNA_2529 0.71 -1.5
368,213 - 10897 mRNA_2529 0.73 -0.7
368,219 - 10897 mRNA_2529 0.74 -1.8
368,287 - 10897 mRNA_2529 0.78 +0.6
368,747 - -0.3
368,761 + -0.1
368,772 + -0.5
369,193 + 10898 mRNA_2530 0.14 +1.4
369,440 + 10898 mRNA_2530 0.29 +0.8
369,446 + 10898 mRNA_2530 0.29 +0.1
369,574 - 10898 mRNA_2530 0.37 -0.6
369,653 - 10898 mRNA_2530 0.41 +0.2
369,678 + 10898 mRNA_2530 0.43 +0.6
369,903 + 10898 mRNA_2530 0.56 +1.7
369,987 - 10898 mRNA_2530 0.61 +0.3
370,047 - 10898 mRNA_2530 0.65 +0.3
370,056 - 10898 mRNA_2530 0.65 -0.1
370,078 - 10898 mRNA_2530 0.66 -1.0
370,187 - 10898 mRNA_2530 0.73 -0.8
370,188 + 10898 mRNA_2530 0.73 -0.2
370,195 - 10898 mRNA_2530 0.73 -0.1
370,200 + 10898 mRNA_2530 0.74 -0.5
370,227 + 10898 mRNA_2530 0.75 +1.0
370,325 - 10898 mRNA_2530 0.81 +0.2
370,356 - 10898 mRNA_2530 0.83 +0.4
370,366 + 10898 mRNA_2530 0.83 +0.3
370,472 + 10898 mRNA_2530 0.90 -1.1
370,531 + -1.4
370,676 + +0.9
370,787 - -0.0
371,078 + -0.3
371,550 + +0.3
371,642 + -0.7

Or see this region's nucleotide sequence