Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2745

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11112 and 11113 are separated by 949 nucleotides11113 and 11114 are separated by 236 nucleotides mRNA_2744: 11112 - K20798 HENMT1 small RNA 2'-O-methyltransferase, at 120,762 to 122,799 11112 mRNA_2745: 11113 - HMMPfam-GlcNAc-PI de-N-acetylase-PF02585,SUPERFAMILY--SSF102588,SUPERFAMILY--SSF49785, at 123,749 to 127,463 11113 mRNA_2746: 11114 - K00859 coaE dephospho-CoA kinase, at 127,700 to 128,562 11114

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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122,753 + +1.0
122,878 - +0.3
122,988 - -1.4
122,995 + -0.9
122,996 - -0.2
123,012 + +0.1
123,013 + +0.4
123,033 + +0.3
123,038 - -0.0
123,041 + +1.7
123,051 - -1.3
123,059 - +0.3
123,060 + +0.7
123,069 + -0.5
123,069 + -0.0
123,071 - -1.5
123,073 + +0.8
123,082 + -0.3
123,105 + +0.0
123,112 - -0.1
123,122 + -0.2
123,151 + +1.2
123,166 + +0.5
123,173 - +0.0
123,173 - -0.8
123,178 + -1.1
123,188 - -0.7
123,202 + -0.1
123,210 + +0.2
123,315 - -0.1
123,394 + -0.7
123,422 - -1.2
123,442 - +0.1
123,474 + -0.2
123,487 - -0.2
123,499 + +2.9
123,502 + -1.0
123,517 + +0.2
123,518 - +0.6
123,547 + -1.6
123,548 - -0.6
123,562 + +0.6
123,573 + -0.4
123,590 - +0.4
123,605 - +0.8
123,608 - +1.0
123,672 + +0.4
123,690 + -0.2
123,725 + +0.2
123,749 + +0.3
123,750 - -0.8
123,863 - -0.4
123,871 + -0.6
123,901 + -0.0
124,183 + 11113 mRNA_2745 0.12 +1.2
124,185 - 11113 mRNA_2745 0.12 +0.4
124,353 - 11113 mRNA_2745 0.16 +1.6
124,355 - 11113 mRNA_2745 0.16 +0.7
124,414 - 11113 mRNA_2745 0.18 -0.3
124,458 + 11113 mRNA_2745 0.19 -0.4
124,709 - 11113 mRNA_2745 0.26 +0.3
124,794 - 11113 mRNA_2745 0.28 -0.2
124,794 + 11113 mRNA_2745 0.28 -0.0
125,041 + 11113 mRNA_2745 0.35 -0.1
125,048 - 11113 mRNA_2745 0.35 +2.3
125,398 - 11113 mRNA_2745 0.44 +0.7
125,714 + 11113 mRNA_2745 0.53 -0.1
125,794 + 11113 mRNA_2745 0.55 +0.6
125,855 + 11113 mRNA_2745 0.57 +1.6
125,941 + 11113 mRNA_2745 0.59 -0.7
126,259 - 11113 mRNA_2745 0.68 +0.4
126,267 + 11113 mRNA_2745 0.68 +0.4
126,362 + 11113 mRNA_2745 0.70 +0.5
126,570 + 11113 mRNA_2745 0.76 -1.4
126,715 + 11113 mRNA_2745 0.80 -0.9
126,720 - 11113 mRNA_2745 0.80 -0.4
126,846 + 11113 mRNA_2745 0.83 -0.5
126,969 - 11113 mRNA_2745 0.87 +0.4
126,969 - 11113 mRNA_2745 0.87 -1.5
127,054 + 11113 mRNA_2745 0.89 -0.0
127,325 + +0.2
127,413 + +1.0
127,419 + -0.3
127,434 - -1.1

Or see this region's nucleotide sequence