Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2748

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11116 and 11117 are separated by 632 nucleotides mRNA_2748: 11116 - KOG3772 M-phase inducer phosphatase, at 131,237 to 131,877 11116 mRNA_2749: 11117 - K02146 ATPeV0D, ATP6D V-type H+-transporting ATPase subunit d, at 132,510 to 133,901 11117

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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130,247 - +0.3
130,392 + +0.3
130,540 + +0.0
130,549 + -1.8
130,555 + -0.5
130,688 + -1.3
130,701 + -0.6
130,706 - +0.2
130,712 + +0.8
130,719 + -1.2
130,825 - -0.1
130,843 - -0.1
130,861 - -0.7
130,865 + +0.2
130,870 + -0.1
130,870 + +0.7
130,874 - +1.4
130,874 + -0.4
130,899 - +1.1
130,900 + +0.7
130,908 + +0.6
130,916 - -0.7
130,923 + -0.4
130,924 + +0.1
130,927 + +0.8
130,994 - -0.3
131,011 - +0.1
131,019 + +0.2
131,020 + +0.3
131,025 - +1.0
131,029 + +0.4
131,033 + -0.2
131,049 + -0.3
131,051 + +1.3
131,056 + +0.1
131,061 + +1.1
131,104 + +1.3
131,117 + +0.7
131,153 + -0.7
131,207 + +1.1
131,208 + +0.8
131,300 - -0.0
131,437 - 11116 mRNA_2748 0.31 +0.5
131,467 + 11116 mRNA_2748 0.36 +0.7
131,846 + +1.2
131,870 - +0.2
132,017 - +0.7
132,020 + -3.0
132,023 - -0.3
132,041 + +0.9
132,181 + -0.1

Or see this region's nucleotide sequence