Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2782

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11150 and 11151 are separated by 847 nucleotides mRNA_2782: 11150 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 198,574 to 201,487 11150 mRNA_2783: 11151 - BLAST NADH dehydrogenase (ubiquinone) Fe-S protein 5 [C..., at 202,335 to 202,970 11151

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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197,581 + -0.9
197,609 - -1.0
197,660 - +0.3
197,676 + -0.3
197,679 + +0.8
197,687 - +0.9
197,702 + +1.0
197,721 - -0.7
197,721 + +0.6
197,746 - -0.3
197,823 + -0.1
197,828 - +1.7
197,960 - -0.3
197,971 - +0.5
197,975 - +0.3
197,976 - +0.4
197,982 + -0.2
197,986 - +0.1
197,988 - +1.0
197,990 - +0.2
198,009 + -1.1
198,010 + +0.7
198,019 - +1.4
198,023 + -0.3
198,025 - +2.7
198,139 + -0.1
198,151 + +0.2
198,159 - +0.3
198,306 - -0.7
198,310 - -0.3
198,321 + +0.3
198,331 - +0.3
198,337 + +1.8
198,468 + -0.6
198,491 + +0.5
198,510 + +0.5
199,391 - 11150 mRNA_2782 0.28 +0.0
200,132 - 11150 mRNA_2782 0.53 -0.6
201,016 + 11150 mRNA_2782 0.84 -0.1
201,285 - +0.1
201,566 - +0.1
201,864 - -0.9
201,867 - +0.4
201,877 - -0.3
201,878 + -0.4
201,878 + +0.8
201,894 + -0.3
202,018 - -0.2
202,020 + +0.1
202,030 + -0.2
202,038 - +0.1
202,041 + +0.1
202,042 + +1.9

Or see this region's nucleotide sequence