Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2938

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11305 and 11306 are separated by 119 nucleotides11306 and 11307 are separated by 551 nucleotides mRNA_2937: 11305 - K14521 NAT10, KRE33 N-acetyltransferase 10, at 591,164 to 595,198 11305 mRNA_2938: 11306 - Hypothetical Protein, at 595,318 to 600,734 11306 mRNA_2939: 11307 - K17807 TAM41, MMP37 mitochondrial translocator assembly and maintenance protein 41, at 601,286 to 603,136 11307

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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595,381 + +0.2
595,445 - +0.1
595,631 + +0.3
596,097 + 11306 mRNA_2938 0.14 +0.8
596,098 - 11306 mRNA_2938 0.14 -0.9
596,168 - 11306 mRNA_2938 0.16 +0.8
596,210 - 11306 mRNA_2938 0.16 +0.2
596,294 + 11306 mRNA_2938 0.18 +0.9
596,485 + 11306 mRNA_2938 0.22 +1.8
596,498 - 11306 mRNA_2938 0.22 -0.8
596,534 + 11306 mRNA_2938 0.22 +0.4
596,604 + 11306 mRNA_2938 0.24 +0.4
596,644 + 11306 mRNA_2938 0.24 -0.6
596,644 + 11306 mRNA_2938 0.24 +0.5
596,656 + 11306 mRNA_2938 0.25 +0.0
596,672 + 11306 mRNA_2938 0.25 -0.3
596,779 - 11306 mRNA_2938 0.27 -0.9
596,791 - 11306 mRNA_2938 0.27 -0.4
596,832 + 11306 mRNA_2938 0.28 -1.3
597,136 + 11306 mRNA_2938 0.34 -1.0
597,423 + 11306 mRNA_2938 0.39 -0.3
597,430 + 11306 mRNA_2938 0.39 -0.0
597,716 + 11306 mRNA_2938 0.44 -1.8
597,895 - 11306 mRNA_2938 0.48 -0.5
597,965 + 11306 mRNA_2938 0.49 +0.8
598,015 - 11306 mRNA_2938 0.50 -0.3
598,102 - 11306 mRNA_2938 0.51 -0.2
598,156 - 11306 mRNA_2938 0.52 +0.8
598,609 - 11306 mRNA_2938 0.61 +0.0
598,723 + 11306 mRNA_2938 0.63 -0.7
598,749 - 11306 mRNA_2938 0.63 -0.6
599,017 + 11306 mRNA_2938 0.68 +0.7
599,030 + 11306 mRNA_2938 0.69 -0.2
599,196 - 11306 mRNA_2938 0.72 -0.2
599,238 + 11306 mRNA_2938 0.72 -1.1
599,324 - 11306 mRNA_2938 0.74 -0.1
599,343 - 11306 mRNA_2938 0.74 -0.3
599,343 - 11306 mRNA_2938 0.74 -1.1
599,377 + 11306 mRNA_2938 0.75 +0.1
599,379 + 11306 mRNA_2938 0.75 +0.9
599,629 - 11306 mRNA_2938 0.80 -0.1
599,632 + 11306 mRNA_2938 0.80 +0.3
599,643 + 11306 mRNA_2938 0.80 -0.8
599,698 + 11306 mRNA_2938 0.81 +0.1
599,698 + 11306 mRNA_2938 0.81 -0.3
599,838 - 11306 mRNA_2938 0.83 -0.9
600,943 - -0.2
600,960 - -0.8
601,002 + +2.2
601,166 - +0.1
601,185 - -0.2

Or see this region's nucleotide sequence