Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2998

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11365 and 11366 are separated by 182 nucleotides11366 and 11367 are separated by 376 nucleotides mRNA_2997: 11365 - K14768 UTP7, WDR46 U3 small nucleolar RNA-associated protein 7, at 39,217 to 41,331 11365 mRNA_2998: 11366 - KOG3383 Uncharacterized conserved protein, at 41,514 to 42,818 11366 mRNA_2999: 11367 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 43,195 to 45,486 11367

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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41,387 + +0.8
41,392 + +0.8
41,474 + -0.6
41,479 - -0.7
41,531 + -0.0
41,644 - +0.2
41,783 + 11366 mRNA_2998 0.21 -0.4
41,918 - 11366 mRNA_2998 0.31 +0.5
41,944 + 11366 mRNA_2998 0.33 -1.7
42,217 + 11366 mRNA_2998 0.54 -0.1
42,221 - 11366 mRNA_2998 0.54 -0.1
42,227 - 11366 mRNA_2998 0.55 -0.3
42,397 + 11366 mRNA_2998 0.68 +0.3
42,602 - 11366 mRNA_2998 0.83 +0.7
42,633 - 11366 mRNA_2998 0.86 -0.4
42,918 + +0.2
43,254 + -0.0
43,254 + +0.9
43,407 + +0.5
43,520 + 11367 mRNA_2999 0.14 +0.7
43,547 - 11367 mRNA_2999 0.15 -0.9

Or see this region's nucleotide sequence