Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3014

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11381 and 11382 are separated by 532 nucleotides11382 and 11383 are separated by 767 nucleotides mRNA_3013: 11381 - KOG1889 Putative phosphoinositide phosphatase, at 74,992 to 77,769 11381 mRNA_3014: 11382 - K14404 CPSF4, YTH1 cleavage and polyadenylation specificity factor subunit 4, at 78,302 to 78,988 11382 mRNA_3015: 11383 - KOG3252 Uncharacterized conserved protein, at 79,756 to 80,863 11383

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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77,938 - +1.4
78,094 - +0.0
78,271 + -0.6
79,367 - -0.1
79,391 + +1.4
79,662 - -0.2
79,670 + -0.6
79,672 + -0.3
79,699 + +1.0
79,720 + +0.4
79,723 + -1.4
79,840 + -0.0

Or see this region's nucleotide sequence