Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3101

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11469 and 11470 are separated by 222 nucleotides mRNA_3101: 11469 - K01490 AMPD AMP deaminase, at 321,739 to 325,524 11469 mRNA_3102: 11470 - BLAST mannoprotein [Rhizoctonia solani AG-1 IA], at 325,747 to 328,243 11470

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
320,883 - +0.2
320,888 + +0.2
321,003 + +0.9
321,170 + +0.1
321,199 + +0.7
321,208 + +0.3
321,210 + -0.9
321,210 + +0.4
321,220 + -1.2
321,262 - -0.2
321,265 - +0.5
321,270 - -0.0
321,270 - -0.4
321,274 + -0.4
321,275 + +0.3
321,279 + -0.3
321,338 + -0.8
321,484 + +0.1
321,492 + +0.2
321,762 - +0.6
321,792 + +0.9
321,921 - +0.5
321,923 + -0.0
321,932 + +0.2
322,391 - 11469 mRNA_3101 0.17 -1.5
322,396 - 11469 mRNA_3101 0.17 +0.2
322,516 - 11469 mRNA_3101 0.21 +0.9
322,517 + 11469 mRNA_3101 0.21 -1.7
322,656 + 11469 mRNA_3101 0.24 +0.3
322,847 + 11469 mRNA_3101 0.29 -0.3
322,865 - 11469 mRNA_3101 0.30 -1.5
323,103 + 11469 mRNA_3101 0.36 +0.1
323,365 + 11469 mRNA_3101 0.43 +0.0
323,668 - 11469 mRNA_3101 0.51 -0.6
323,936 + 11469 mRNA_3101 0.58 +0.1
324,112 - 11469 mRNA_3101 0.63 -0.4
324,135 + 11469 mRNA_3101 0.63 -2.0
324,393 + 11469 mRNA_3101 0.70 +0.6
324,516 - 11469 mRNA_3101 0.73 -1.2
324,550 - 11469 mRNA_3101 0.74 +1.0
324,799 - 11469 mRNA_3101 0.81 +0.4
324,964 - 11469 mRNA_3101 0.85 +1.6
324,971 + 11469 mRNA_3101 0.85 +0.1
325,072 + 11469 mRNA_3101 0.88 -0.0
325,117 + 11469 mRNA_3101 0.89 +0.1
325,139 + 11469 mRNA_3101 0.90 +0.2
325,143 + 11469 mRNA_3101 0.90 +0.3
325,252 - -0.0
325,291 + +0.9
325,413 - -0.5
325,413 - -0.1
325,421 - +0.0
325,435 + -0.3
325,445 - +1.1
325,534 - +0.0
325,557 + -0.3
325,558 - +0.2
325,559 - +0.7
325,561 - +1.1
325,562 - -1.5
325,568 - -4.8
325,568 - -0.3
325,572 + +0.3
325,575 - +0.4
325,577 - -0.2
325,579 - +0.6
325,581 - -0.5
325,595 - +1.6
325,595 - -0.3
325,595 - -1.1
325,596 + -0.1
325,601 + +0.1
325,603 - +0.9
325,722 + +0.3
325,735 - +1.4
325,750 - +0.5
325,762 - -0.0
325,763 - -0.5
325,763 - -0.5
325,763 - -0.2
325,763 - -0.1
325,763 - -1.3
325,763 - -0.8
325,764 - -0.2
325,768 + -1.0
325,768 - -0.1
325,769 - +0.1
325,770 + +0.6
325,771 + +0.7
325,772 + -0.3
325,772 - -0.6
325,775 + +0.1
325,777 + +0.4
325,786 - -0.2
325,795 + -0.8
325,804 - +0.9
325,823 + -0.5
325,871 + +1.8
325,874 - -0.1
325,891 + +0.4
325,894 - +0.7
325,902 + -0.0
325,903 - -1.3
325,904 + -0.6
325,906 - +0.4
325,909 + +0.6
325,918 - -0.1
325,918 - +0.9
325,921 - -0.5
325,922 + -0.6
325,922 + -0.1
325,923 - -1.6
325,924 + -0.2
325,928 + +0.7
325,929 + -0.3
325,930 - +0.5
325,932 - -0.2
325,935 - -0.8
325,936 + -0.3
325,944 + +0.7
325,946 - +0.5
325,950 + -0.5
325,952 + -0.5
325,953 - -0.5
325,957 - -0.4
326,077 - 11470 mRNA_3102 0.13 +0.8
326,078 - 11470 mRNA_3102 0.13 -0.8
326,084 + 11470 mRNA_3102 0.13 +0.3
326,089 - 11470 mRNA_3102 0.14 -0.3
326,090 - 11470 mRNA_3102 0.14 -0.5
326,091 - 11470 mRNA_3102 0.14 -0.6
326,095 - 11470 mRNA_3102 0.14 +0.2
326,096 - 11470 mRNA_3102 0.14 -0.1
326,101 + 11470 mRNA_3102 0.14 -0.6
326,101 + 11470 mRNA_3102 0.14 -0.3
326,117 + 11470 mRNA_3102 0.15 -0.0
326,122 + 11470 mRNA_3102 0.15 -0.1
326,221 + 11470 mRNA_3102 0.19 -0.8
326,223 - 11470 mRNA_3102 0.19 +0.9
326,226 - 11470 mRNA_3102 0.19 +0.1
326,235 - 11470 mRNA_3102 0.20 +0.4
326,249 + 11470 mRNA_3102 0.20 -0.5
326,251 - 11470 mRNA_3102 0.20 +0.2
326,263 + 11470 mRNA_3102 0.21 -1.1
326,270 + 11470 mRNA_3102 0.21 +0.2
326,294 + 11470 mRNA_3102 0.22 -0.2
326,306 + 11470 mRNA_3102 0.22 +0.8
326,405 + 11470 mRNA_3102 0.26 +1.5
326,417 - 11470 mRNA_3102 0.27 -0.2
326,498 + 11470 mRNA_3102 0.30 -0.6
326,513 + 11470 mRNA_3102 0.31 +0.4

Or see this region's nucleotide sequence