Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3108

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11475 and 11476 are separated by 111 nucleotides11476 and 11477 are separated by 214 nucleotides mRNA_3107: 11475 - K11412 SIRT2, SIR2L2 NAD-dependent deacetylase sirtuin 2, at 339,155 to 340,730 11475 mRNA_3108: 11476 - KOG2203 GTP-binding protein, at 340,842 to 344,399 11476 mRNA_3109: 11477 - K13172 SRRM2, SRM300 serine/arginine repetitive matrix protein 2, at 344,614 to 345,945 11477

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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339,885 - 11475 mRNA_3107 0.46 +0.8
339,899 - 11475 mRNA_3107 0.47 +1.2
340,066 - 11475 mRNA_3107 0.58 -0.3
340,193 - 11475 mRNA_3107 0.66 -0.2
340,195 - 11475 mRNA_3107 0.66 -0.0
340,288 - 11475 mRNA_3107 0.72 +0.6
340,635 + -0.2
340,676 - +0.6
340,790 - +0.5
340,907 - -0.1
341,035 - +0.1
341,059 - -1.1
341,067 + -1.4
341,086 - -0.8
341,250 + 11476 mRNA_3108 0.11 -0.4
341,659 + 11476 mRNA_3108 0.23 -0.8
341,682 + 11476 mRNA_3108 0.24 +0.8
341,785 + 11476 mRNA_3108 0.27 +2.0
341,810 - 11476 mRNA_3108 0.27 -0.1
342,229 + 11476 mRNA_3108 0.39 -0.1
342,398 + 11476 mRNA_3108 0.44 -1.6
342,416 - 11476 mRNA_3108 0.44 -0.9
342,490 - 11476 mRNA_3108 0.46 +0.7
342,511 + 11476 mRNA_3108 0.47 -0.2
342,529 + 11476 mRNA_3108 0.47 -0.7
342,802 - 11476 mRNA_3108 0.55 +0.1
342,827 + 11476 mRNA_3108 0.56 +0.5
342,975 + 11476 mRNA_3108 0.60 -0.0
342,985 - 11476 mRNA_3108 0.60 +1.4
343,106 - 11476 mRNA_3108 0.64 +0.3
343,277 + 11476 mRNA_3108 0.68 -0.6
343,306 + 11476 mRNA_3108 0.69 +0.1
343,565 + 11476 mRNA_3108 0.77 -0.0
343,597 + 11476 mRNA_3108 0.77 +0.2
343,695 + 11476 mRNA_3108 0.80 +0.6
343,859 - 11476 mRNA_3108 0.85 -0.5
344,002 - 11476 mRNA_3108 0.89 -0.3
344,131 - +0.8
344,132 + +1.3
344,134 + +0.2
344,135 - -0.2
344,142 - -0.4
344,155 - +0.6
344,269 + +0.6
344,277 - +0.7
344,283 + -0.7
344,292 - +0.4
344,292 - +0.2
344,298 - -0.5
344,299 + -2.2
344,302 + +0.1
344,306 + -0.7
344,437 - +0.4
344,438 - +0.8
344,439 - +1.9
344,451 - +0.3
344,451 + +0.9
344,457 + -0.0
344,457 - +1.0
344,458 + +0.3
344,549 - -0.1
344,575 - -0.5
344,575 + +0.6
344,582 - -2.8
344,584 - -0.1
344,586 - +0.7
344,588 - +1.4
344,589 + +1.6
344,595 - +0.4
344,596 + +0.3
344,603 + -0.4
344,614 + +0.7
344,733 - +0.3
344,741 + -0.8
344,746 - +0.2
344,749 + 11477 mRNA_3109 0.10 +0.5
344,864 - 11477 mRNA_3109 0.19 +0.7
344,872 - 11477 mRNA_3109 0.19 -0.4
344,875 + 11477 mRNA_3109 0.20 +0.8
344,901 + 11477 mRNA_3109 0.22 +0.2
345,007 - 11477 mRNA_3109 0.30 -0.8
345,018 + 11477 mRNA_3109 0.30 -1.0
345,042 + 11477 mRNA_3109 0.32 +0.2
345,060 - 11477 mRNA_3109 0.33 +1.0
345,141 - 11477 mRNA_3109 0.40 +0.3
345,142 + 11477 mRNA_3109 0.40 +0.4
345,165 + 11477 mRNA_3109 0.41 +0.2
345,306 - 11477 mRNA_3109 0.52 -0.0

Or see this region's nucleotide sequence