Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3120

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11487 and 11488 are separated by 332 nucleotides11488 and 11489 are separated by 9 nucleotides11489 and 11490 are separated by 520 nucleotides mRNA_3119: 11487 - BLAST Spindle pole body protein pcp1 [Hypsizygus marmoreus], at 362,785 to 367,104 11487 mRNA_3120: 11488 - BLAST Protein cps3 [Rhizoctonia solani], at 367,437 to 369,368 11488 mRNA_3121: 11489 - KOG1039 Predicted E3 ubiquitin ligase, at 369,378 to 369,678 11489 mRNA_3122: 11490 - K05290 PIGK phosphatidylinositol glycan, class K, at 370,199 to 371,731 11490

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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366,560 + 11487 mRNA_3119 0.87 +0.6
366,566 + 11487 mRNA_3119 0.88 -0.1
366,729 + -0.9
366,856 + -1.3
366,994 - +0.5
366,995 - +0.1
367,159 + +0.9
367,164 + -0.3
367,165 + +1.4
367,167 + -0.0
367,198 - +0.4
367,201 - +0.4
367,207 + -0.5
367,211 + +0.3
367,317 - +0.5
367,318 + +0.7
367,326 - -0.6
367,329 - +0.4
367,473 - -0.7
367,478 - +0.7
367,501 + -1.2
367,603 - +0.6
367,763 - 11488 mRNA_3120 0.17 -0.1
367,924 - 11488 mRNA_3120 0.25 +1.7
367,933 + 11488 mRNA_3120 0.26 -0.5
367,936 + 11488 mRNA_3120 0.26 +0.0
367,990 - 11488 mRNA_3120 0.29 +0.3
368,006 + 11488 mRNA_3120 0.29 +0.5
368,074 - 11488 mRNA_3120 0.33 +0.7
368,208 + 11488 mRNA_3120 0.40 +0.2
368,242 + 11488 mRNA_3120 0.42 -1.4
368,341 + 11488 mRNA_3120 0.47 -1.0
368,502 + 11488 mRNA_3120 0.55 -0.7
368,540 + 11488 mRNA_3120 0.57 +1.3
368,552 + 11488 mRNA_3120 0.58 +0.9
368,665 - 11488 mRNA_3120 0.64 +0.3
368,683 - 11488 mRNA_3120 0.64 -0.3
368,698 + 11488 mRNA_3120 0.65 +1.2
368,809 - 11488 mRNA_3120 0.71 -1.1
368,918 + 11488 mRNA_3120 0.77 -0.0
368,966 + 11488 mRNA_3120 0.79 -0.7
368,967 + 11488 mRNA_3120 0.79 -0.8
368,975 + 11488 mRNA_3120 0.80 +0.1
369,079 + 11488 mRNA_3120 0.85 +0.5
369,090 + 11488 mRNA_3120 0.86 +1.6
369,227 - +0.8
369,231 - +1.6
369,236 - +0.6
369,237 - -0.5
369,239 + +0.0
369,268 - +0.1
369,302 + -0.2
369,370 - +0.8
369,372 - +0.5
369,394 + -0.6
369,402 - -1.0
369,521 - 11489 mRNA_3121 0.48 +1.1
369,635 + 11489 mRNA_3121 0.85 -1.3
369,665 - +0.1
369,705 + +0.8
369,706 - -0.6
369,710 + -0.5
369,828 - +0.9
369,834 - +0.2
369,968 - -2.3
369,972 - +0.2
369,980 + +0.6
369,994 - +0.1
370,120 - -1.6
370,127 + -1.2
370,128 - -0.1
370,140 - -0.2
370,144 - -0.0
370,145 + +0.1
370,145 + +1.3
370,156 - -0.1
370,159 + -0.2
370,281 - +0.2
370,287 - -0.3
370,336 + +0.0

Or see this region's nucleotide sequence