Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3169

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11537 and 11538 are separated by 647 nucleotides mRNA_3169: 11537 - Hypothetical Protein, at 529 to 1,526 11537 mRNA_3170: 11538 - Hypothetical Protein, at 2,174 to 3,237 11538

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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12 + +0.1
12 + +0.2
15 + +0.2
16 + +0.1
18 + -0.5
22 + +1.5
25 + -1.3
57 - -0.6
61 - -0.4
62 + -0.2
62 + -0.2
66 + +0.5
72 + -0.3
72 + +0.1
72 + +0.2
75 + +0.6
78 - -2.4
105 + +1.3
110 - +0.2
114 + +0.3
115 + -0.2
118 + -1.3
122 + -0.2
122 - +0.2
124 + +0.1
135 + -0.3
147 + +1.1
157 + -1.7
161 + +0.4
168 + +1.8
174 + -0.2
177 - -0.4
228 + -0.4
247 + -0.1
252 - +0.0
253 - -0.2
255 + +0.2
258 + -0.4
264 - +0.5
269 + +0.3
269 - -0.5
274 + -0.2
275 - +0.2
277 + -0.9
280 + -0.0
280 + -0.3
283 - +1.0
285 - +0.6
287 + -0.0
287 + -0.2
288 + +0.9
292 - +0.5
293 + +0.2
298 + +0.2
305 - +0.8
314 + +0.3
320 + -0.3
368 + +0.3
370 - -0.1
372 + -0.1
382 + -1.3
384 + +1.0
391 + +0.5
391 - +0.8
397 + -0.8
397 - +0.7
402 + +0.8
405 + -0.0
423 - +0.4
430 + +1.2
440 + -0.3
446 + -0.6
470 + -0.3
524 + -1.7
532 + -1.4
545 - -0.5
557 + +0.4
569 + +0.3
570 - -0.5
583 + +0.2
584 + -0.1
603 - +0.5
603 + +0.1
634 - 11537 mRNA_3169 0.11 +0.0
636 + 11537 mRNA_3169 0.11 -0.4
646 + 11537 mRNA_3169 0.12 +0.1
661 + 11537 mRNA_3169 0.13 -0.5
667 + 11537 mRNA_3169 0.14 +0.5
698 + 11537 mRNA_3169 0.17 +0.3
704 - 11537 mRNA_3169 0.18 +0.3
705 - 11537 mRNA_3169 0.18 -1.1
721 - 11537 mRNA_3169 0.19 +0.3
725 + 11537 mRNA_3169 0.20 +0.1
738 - 11537 mRNA_3169 0.21 +0.3
849 + 11537 mRNA_3169 0.32 -0.0
871 + 11537 mRNA_3169 0.34 -2.4
883 + 11537 mRNA_3169 0.35 +0.5
894 + 11537 mRNA_3169 0.37 -0.2
895 + 11537 mRNA_3169 0.37 -0.0
922 + 11537 mRNA_3169 0.39 -0.0
965 - 11537 mRNA_3169 0.44 +0.8
1,012 - 11537 mRNA_3169 0.48 -1.0
1,026 + 11537 mRNA_3169 0.50 +0.1
1,026 + 11537 mRNA_3169 0.50 -0.4
1,105 + 11537 mRNA_3169 0.58 -0.5
1,123 + 11537 mRNA_3169 0.60 -0.7
1,141 + 11537 mRNA_3169 0.61 +1.2
1,142 + 11537 mRNA_3169 0.61 +0.3
1,165 + 11537 mRNA_3169 0.64 -0.1
1,174 - 11537 mRNA_3169 0.65 -1.6
1,174 + 11537 mRNA_3169 0.65 -2.5
1,259 + 11537 mRNA_3169 0.73 +1.3
1,265 + 11537 mRNA_3169 0.74 -0.1
1,268 + 11537 mRNA_3169 0.74 -0.3
1,269 - 11537 mRNA_3169 0.74 +0.3
1,288 - 11537 mRNA_3169 0.76 +0.8
1,297 + 11537 mRNA_3169 0.77 -3.3
1,303 - 11537 mRNA_3169 0.78 +0.3
1,399 + 11537 mRNA_3169 0.87 +1.0
1,412 - 11537 mRNA_3169 0.88 +0.2
1,419 - 11537 mRNA_3169 0.89 +0.2
1,423 - 11537 mRNA_3169 0.90 -3.9
1,429 - +0.7
1,453 + -0.1
1,459 + +0.4
1,459 + -0.6
1,460 - +0.6
1,461 + +0.8
1,462 + +0.8
1,467 + -0.5
1,470 - +0.1
1,474 - +0.3
1,485 + -0.2
1,520 + +0.1
1,523 + +0.9
1,531 - -0.2
1,537 + -0.2
1,541 + -0.0
1,562 + -0.5
1,567 + +0.9
1,572 + +0.1
1,582 - +1.0
1,584 - -1.6
1,589 + +1.2
1,596 - +1.1
1,601 - -1.4
1,602 + -1.4
1,605 + +1.2
1,609 + -0.8
1,616 + +1.0
1,636 + +0.5
1,654 + +1.2
1,656 - -1.5
1,666 + -0.0
1,675 - -0.3
1,682 - +0.9
1,697 - -0.1
1,709 + +1.0
1,709 - +0.8
1,711 + -0.5
1,718 - +1.2
1,719 + -0.2
1,722 - +0.0
1,723 + -0.4
1,725 - -0.7
1,725 - +1.8
1,727 + +0.2
1,730 + -0.0
1,731 + -0.3
1,732 + +1.2
1,732 + -0.8
1,734 + +0.4
1,734 + +0.7
1,734 + +0.3
1,739 - -0.2
1,740 + +0.4
1,744 - -0.2
1,747 + -0.2
1,749 + -1.0
1,759 + -0.3
1,759 + -0.3
1,759 + +0.5
1,761 + -1.6
1,763 + -0.0
1,765 + +2.0
1,767 + +1.4
1,769 + +1.1
1,772 + -0.2
1,772 + +0.8
1,774 + +0.2
1,774 + +0.1
1,775 + -1.6
1,776 - -1.3
1,776 + -0.7
1,777 + -0.6
1,778 + +0.1
1,778 - +0.2
1,781 - -0.0
1,783 - +0.8
1,783 - +0.4
1,783 - +0.0
1,783 - +0.8
1,784 + +0.8
1,789 + +1.7
1,789 - -0.1
1,791 + +0.7
1,792 + +0.1
1,793 + -0.2
1,795 + +0.6
1,796 + +1.7
1,796 - -0.6
1,798 + -0.2
1,800 + -0.8
1,801 + +0.2
1,805 + +0.3
1,805 + -2.0
1,807 + +0.4
1,813 - -0.6
1,814 + +0.0
1,814 + +0.4
1,818 - -1.0
1,851 - +0.8
1,874 + -0.6
1,881 - +1.0
1,885 - -0.2
1,891 - -1.9
1,896 - +0.7
1,912 + -1.2
1,912 + -0.4
1,914 - -0.1
1,916 - +0.3
1,917 - +0.4
1,919 + +0.4
1,922 - +0.3
1,923 - +0.5
1,934 - +0.3
1,935 + -0.2
1,938 - +0.4
1,938 - +0.5
1,940 - -0.5
1,941 + +0.5
1,941 + -0.4
1,942 + -0.5
1,943 - +0.5
1,944 + +0.1
1,944 - -0.2
1,945 - -1.1
1,945 + +0.4
1,946 - -0.1
1,947 + +0.2
1,960 - -0.0
1,968 + +0.6
1,980 + -1.2
2,015 + +0.6
2,067 - -0.7
2,081 - +0.2
2,091 + -0.3
2,220 + +0.4
2,229 - -1.1
2,235 - -0.2
2,237 - -0.1
2,242 + -0.5
2,242 - +0.1
2,245 - -0.2
2,248 - -0.8
2,251 + -0.0
2,254 - +0.2
2,261 + -0.0
2,262 - +0.3
2,266 + -0.6
2,268 + -0.3
2,400 + 11538 mRNA_3170 0.21 +0.3
2,401 - 11538 mRNA_3170 0.21 -0.7
2,404 + 11538 mRNA_3170 0.22 -0.3
2,414 + 11538 mRNA_3170 0.23 -0.7
2,420 - 11538 mRNA_3170 0.23 -0.7
2,439 + 11538 mRNA_3170 0.25 -0.1
2,446 + 11538 mRNA_3170 0.26 +0.5
2,470 - 11538 mRNA_3170 0.28 +0.4
2,516 - 11538 mRNA_3170 0.32 +0.3

Or see this region's nucleotide sequence